Array 1 470003-471678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRF01000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717 CFSAN024717_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 470003 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 470064 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 470125 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 470186 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 470247 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 470308 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 470369 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 470430 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 470491 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 470553 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 470614 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 470675 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 470736 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 470797 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 470858 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 470919 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 470980 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 471041 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 471102 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 471163 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 471224 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 471285 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 471346 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 471407 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 471468 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 471529 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 471590 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 471651 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487935-489490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRF01000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717 CFSAN024717_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 487935 29 100.0 32 ............................. TAGAGTTTGGTTCTGTTAGTCTCGGGGCTAAA 487996 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 488057 29 100.0 32 ............................. TGATTGCAGTTGCTTTTCCAGTTCGTCAAATC 488118 29 100.0 32 ............................. ATTTTCTATCTCAACGGGCAACTCACCGATCA 488179 29 100.0 32 ............................. ACCCTGGTCAGTCCGATCACGGGGTTAAGCTC 488240 29 100.0 32 ............................. CATCGCCTTGCACTGGGTAAGAGGCCCGTCAG 488301 29 100.0 32 ............................. GCATTTATCGCAGTAAAATTCTTCTCGCCTGT 488362 29 100.0 32 ............................. CGCCAGAAATCTCTTCAGGGTGAAAACTATCT 488423 29 100.0 32 ............................. TATATAGTGCAAATTTTGCGAATTACGCACTG 488484 29 100.0 32 ............................. TCCGCGCCTGGCCCTGGTTATTGCCACTTTCC 488545 29 100.0 32 ............................. GCCGAACGTCCAATATATTGGGGTAGCAAAAA 488606 29 100.0 32 ............................. CTTAGTGTATCGGCTACAGCCCAAGCTATGCG 488667 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCATCTGCGACCTC 488728 29 100.0 32 ............................. ACTGAAACTACAGGCAGGGTAGCGCCGATTTC 488789 29 100.0 33 ............................. TTGAACAGCAAGGAGGAGGCAGTGAAGCAAGGC 488851 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 488912 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 488973 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 489034 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 489095 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 489156 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 489217 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 489278 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 489339 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 489400 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 489461 29 93.1 0 A...........T................ | A [489487] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGACAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACTATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //