Array 1 72425-73615 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJBJ02000014.1 Rothia kristinae strain RUTW2-3 contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 72425 36 100.0 37 .................................... GGAAAATCAACATTAGTGCGGCACATGAATCTGGCAT 72498 36 100.0 38 .................................... GGCGGTATTCCGTGATGCGCCTGCACAGCCCCTTCACC 72572 36 100.0 36 .................................... GAGGTCGCTGGTGCCGGTAGATGCGGGCGCACATGG 72644 36 100.0 36 .................................... AAGGAAGTAGGCGCCCCAGCGGATGCCGTTCTGCCT 72716 36 100.0 36 .................................... TCCCACGGCTGAACCGGGGCGGGGGCGTTCGCCTGC 72788 36 100.0 36 .................................... CGGCCTTTCAGCTCGACGGCGGTCGCGTCGATGAAC 72860 36 100.0 35 .................................... GGTCTACGTGAAGCAGAACCTGAGCTCGGCCGACG 72931 36 100.0 38 .................................... AGGACCAACGCAATCAGCCACCCGGTGTGCTTTTGTGC 73005 36 100.0 37 .................................... ATGGCCGCGGGGGGGCGCCGGCGCCTTCAACTGCTGG 73078 36 100.0 35 .................................... TGCTGGAAGTGATGAGAGAGGAACAAGCATGACCG 73149 36 100.0 36 .................................... GGGCCTTGTTGTGCTGCCCGCGTTCGCAGTCCCGAA 73221 36 100.0 37 .................................... CGAGATCGCGACCGATGTCGCATCCATCATGAACGCG 73294 36 100.0 35 .................................... GCGTCACCTGCGATGACACGCCCCAGCCCACCCCA C [73305] 73366 36 100.0 37 .................................... ATGTCCGCTCCCGGGTGTCGGAGCTTCGTCGGCATGT 73439 36 100.0 34 .................................... CAACCGGAATGGCCCTTCAGGTCTCCGCACAGTG 73509 36 100.0 35 .................................... TCACCGGGTCTTTCCGAAGAATGGTAATCAGGGCG 73580 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 100.0 36 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCGGGATGACGTCCGCCGGTATCTCGTCACCTATGACGTGGCTCAGGACCGGCGCCGGACTCGGCTGGCGAAGGAGTTGGAGCACTATGGGGACAGGATCCAGTACAGCGTGTTCCTCTTCGACATCTCACCGGCGGCGATGCTGCGATTGAAGACGGAGATCCTGGATCTGGTGGATGCGGGTGAGGATTCTGTGCTGATCTGCGATCTGGGGCTGAAGTCCGAGGTCTCCGACAAGAACTTCCAGTACCTGGGAGTGGAGCGTCCGATCACGGACGACTCCGTGATGATCTTCTGACGGCTCTGGGGCGCGCCCCGGGAGGCCGCGAGCGCTCCGGTGGTGGCGAATCCTCGGCGAGCCGTCGCGCCTCTCCTTCCCCGGTATTCCGGGGTGGAGCACCCGCTCTCGGCGCAACACGGCCGGCTTCCGCTAGGCTGTGGAGCGAGCGCTCGCATGACCCTCGGTTTCCCATAGTCAGACCGCGTCAATTTCGGTCAGG # Right flank : G # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 44-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJBJ02000045.1 Rothia kristinae strain RUTW2-3 contig00045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 44 36 100.0 36 .................................... GTGGTTCGTGGCCTCCGACCTCGCCAAGATCCTCGG C [65] 117 36 100.0 34 .................................... CGTTGGCGTTGATGCTCCCCGTCCACACGATGGT 187 36 100.0 37 .................................... GCGCGCACGTCATCCCCGGTGATCTCCGACGCCATGA 260 36 100.0 36 .................................... ATCAGGTCGCCGTGCCCGGCACCGACCTGACTGCCC 332 36 100.0 34 .................................... CGTCTGTGGAGAAGCTGCAGGGGGACTTGGCGGA 402 36 100.0 35 .................................... GACCTCCTTCTCGATGGTGCGCACGATCTCGTCTT 473 36 97.2 35 ............................A....... ATCAGGGCCACCCGCGGCCGCCCGGACAGCCCCTC 544 36 100.0 35 .................................... GGGTCCAACCTAGCGAAATCTGGGTTATACTCGGG 615 36 100.0 37 .................................... GCGCACGCCGGTAATGGTCAGCTCCGGTCCGGGATGC 688 36 100.0 35 .................................... CCCTCATACCGGCTTGCCGGGGTACCTGCATGCCG 759 35 97.2 0 ..............................-..... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.5 36 CCCTCAACGAAGGCCTCCCCACGAAGGGGAGGCGAG # Left flank : CGAGCACCCTCATGCGCGGGGTGGGCGCGGTCTTCACGTGGCTC # Right flank : GGTGCCGATGGCCAGGCCGCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAACGAAGGCCTCCCCACGAAGGGGAGGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 29-1934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJBJ02000023.1 Rothia kristinae strain RUTW2-3 contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 29 36 100.0 38 .................................... ACGGCCACCTGGGACCTCTACCTCTTGGCGCGGGACAC 103 36 100.0 35 .................................... GATCCCCATGAGGCCGTGGACGGTCTGCGAGACCT 174 36 100.0 35 .................................... GTGCATGCATGCTGTCCTGCCAGCCTGCTCGCGCG 245 36 100.0 35 .................................... GGCAACGGTCCAACTCATTCGCTCCAGTCTCCCGC 316 36 100.0 36 .................................... GTGGCCCGTGCCTGCCCGGCCCACAGGTCCAGGACG 388 36 100.0 37 .................................... TTCCGGGTTGCGACACACCAGGGCACCACCCTCCTGC 461 36 100.0 35 .................................... CGGCATGCAGGTACCCCGGCAAGCCGGTATGAGGG 532 36 100.0 35 .................................... CGACCCCCGGGGACGCGGTGACCGGGGTGTCCATG 603 36 100.0 37 .................................... CCGAGGAAGACTGTGCGCGGGTTCCACGACACCGCAT 676 36 100.0 37 .................................... CGCGAATAAGGCCGGGGCGGACCGGGCCGGCATCCTC 749 36 100.0 35 .................................... AGGAAATAGGTGGGCTTATCTTTCGGCTGTTTAGG C [756] 821 36 100.0 34 .................................... GGCCTACGAGTACGTGCGGCAGGTCCGGGCCATG 891 36 100.0 35 .................................... TGCCGCGCCCACCCGTGCGCCGAGTTCCGGTTCAT 962 36 100.0 36 .................................... ACAGGAACGAGGCTGGAGTCATCCCCACTTGGACGC 1034 36 100.0 36 .................................... ACGCGCTTCGACGGTCGTAGGCAGAGCCATGTCCGA 1106 36 100.0 36 .................................... ACGCCACATGACGTTTTCTGTGATGAGGTTTTCGCC 1178 36 100.0 36 .................................... AACGAGGCCGCGGACGGGAAGGCCCGCCGCACCGAG 1250 36 100.0 37 .................................... TCCGCTGTCCGGGAGTGGCAGGCTAGGGGCGCCCTGC 1323 36 100.0 34 .................................... ACCACGCGGGACGGCGTGGAGGGCACGTCCCTGG 1393 36 100.0 38 .................................... CTGATGTGGAAGACCGGCCACTCCCGCCGAACCATGAT 1467 36 100.0 36 .................................... CCGGCGGCCACCGCCGCATCGGTCAGGGCCTTCCAC 1539 36 100.0 38 .................................... GGAGGGGCTTCGCGGGGGTACCCCCCACCCCCTCCAGG 1613 36 100.0 36 .................................... TCGCGGACGAAGTGGTCGAGCCAGTGGTCGCTGCGC 1685 36 97.2 34 ............................A....... GCGACGGCCTGCCACCGGTGGGGCCGAGGGGGTC 1755 36 97.2 36 .G.................................. CCCCTGAGATCTGGTCCGCGTGCCTGCCGTGCCTGG 1827 36 97.2 36 ..................A................. CGGGTTCAGGTAACCCGCGCCATTCCTGGGAATCGT 1899 36 94.4 0 .....................T.............A | ========== ====== ====== ====== ==================================== ====================================== ================== 27 36 99.5 36 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCCGCCACCACACGGCCAAAAGCGTCACC # Right flank : AAATGTCGACGCCGAGGTGCAGGTAGCACACGCGACCCACGCTCCCCTTCAGGGGGAGGCCTTCGCCCGCTCCAACAGCCGGACGCACCTCAGGCATCGTCGACGTCCGCCACAGTAGAATCGAAGCCACAACGACGTGCGCCACCGAGCAAGGAGCGATCAGCGATGGTCCGCCTCAGCGACCTCATCTCCGTCCCAGCGATCCGCTTGGAGGTCGATGCCGAGGACTGGCGCAGCGCCATCCAGCACGCCGGAGCGCTCTTGGCCGACGTCGGCGTCGCCGGGCCGTCCTACACCCAGGCCATGGTCGACGTCGTCGAGGAGCACGGGCCGTACATCGTCATCACGCCCGGCTTCGCCCTGGCTCATGCCCGACCGGACGCCTCGGTGACCGCCACCGGCCTGTCCTTCGTCCGCCTGGCCGCACCCGTCCGTTTCGGTCACGCCTCCAACGACCCCGTCACCATCGTGATGGCGCTGACCGCACAGGACCCTGGCGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //