Array 1 14567-14900 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDFG01000043.1 Streptomyces hygroscopicus subsp. hygroscopicus strain OsiSh-2 Scaffold35_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14567 29 100.0 32 ............................. TCCGTCCGTTGGGCCCACCGCGGTCAGGCTGG 14628 29 100.0 32 ............................. TCGAGCGGATCCACCACGACTTCGCCGAGCTC 14689 29 100.0 32 ............................. GTCGAGGTTGTCCTCGTCGAGATACTGCGAAC 14750 29 100.0 32 ............................. ACGGTGGAGGCGGTCCTGTGGGACTTCGCCTG 14811 29 100.0 32 ............................. GACGACGCCGAGGTCTGCCGTCTCCTGTACAC 14872 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTAAGCCCCGCGCAAGCAGGGATGTCTCG # Left flank : GCGCGGTCGATCATGTCCTGTTGTCCAAACGGCCAACCGAGTTTTTCCAGCATGCATCGTCGGCCAAGATGAACGGGGACTGCCGAGTGCGAGGTAGCCGCCCGGGGCCACCCGGCACGGACCTCGGCAGCGAGGGGACCGGTTGCGCGAGGCAGCCGGCGTTCGACTTCCCTCAAAGGGCGAAGGGCTCCACCCGCAGCCGGAGCTGACGGGACAGGTCCGATGCTGCGAGGATGCCGCAGACAATGTCCTGTTCATCTATGTTACGGCGTGTACCGCGACCCCCGCCCCCAGCGCGAAGCAAGCGTCCCCCGCACAAACATCGATGACCTTCCCGGGACTTCTCACTGACCCGGAAAGCAGACCTCGCACGCCCACCGGGCACAAGTCGCCCCTACTCAAGTAGAACTGCCGACACCACCAGCGATACTCTGACCACGCGACACCAGCGGACACACAAAAGGTTGGCAAAGCCATTCGAAAACACCAGGTCGTAAAGG # Right flank : GACCTTCGTCTGAGGTTCCCCCGCTGTGCGGGTGTGGCTGATTAGCTGGTCAGGGCGGGTTGACGTGGTTTCAGGTTCACTGGTTCGGCCGCTGCCTGGTCGGCGTAGTGCTTCTCCTCGAACTCGATCGGGCTGAGGTAGCCGAGCCGTTGCTGGATGCGGCGGGGGTTGTAGAAGCCGTCGATGTATTCGAAGAGGGCGAGGTTCGCCTCGGCCCTGGTGGCGAAGACGCGGCCGCGGATGCACTCGGTTTTGATCAGTATCCACAGGTTCTCCGCCAGGGCGTTGTCGAACGAGTCGCCGACCGAGCCCATGGACGCCTGGACCCCTGCTCTGACCAGGCGTGTCGTGAGCTTGATGGAGGTGTATTGCGTGCCGTGGTCGGCATGGTGGATGAGCTCGCCGGGGGTGACCTCGCGGCTGGTGAGGGCGTACTCCAGGGATGACAGGACGAGGTCGGCGTCCGCGTGGGCGGAGGTCTCCCAGGCCACGACCCTGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCAGGGATGTCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 132726-131724 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDFG01000013.1 Streptomyces hygroscopicus subsp. hygroscopicus strain OsiSh-2 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132725 28 100.0 33 ............................ ACGCAGCATCCATGGACGGGTCCGGGATGGACT 132664 28 100.0 33 ............................ GGCCCGATGGGGTATCGCCGGGACCACCCGCAC 132603 28 100.0 33 ............................ GCCGTCCGTGACCCGCGGGGAACTCCGCACCTT 132542 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 132481 28 100.0 33 ............................ GTAGCAGGACGGAGCCTGTTCGCCGGTGATGAT 132420 28 100.0 33 ............................ GCGGTCAGGTGCCGAGAGAATCCCAGAATGAGC 132359 28 96.4 33 ...........G................ CAGACACGCCGCAACGGCGGCTGCGCCGACCCG 132298 28 100.0 33 ............................ TCTCTGACCCATCACGAACCTGGGGTCTGCGCT 132237 28 100.0 33 ............................ GCCGGAGATGAGCGCCCGGCCGGAGTACAGGGT 132176 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 132115 28 100.0 33 ............................ CTCCCACTCCAGCTCTCTGACGCTCGCCAGGAT 132054 28 100.0 33 ............................ CTGCTCGATCGCCGTGGCGAGGACTCGGGCGTG 131993 28 100.0 33 ............................ CCGTCAGCAGACGTCTCCACCGTCAACACGCGC 131932 26 89.3 33 ............T--............. TCCCTCGGCTCGCCGCCTCCCATCTCGCGTCCT 131873 28 100.0 33 ............................ GCTGCGGGCGGCTGGGCTGCTCGCGCCGTGACG 131812 28 100.0 33 ............................ GGCGGACCCGGGTGTGCTCGGGCGGATCCATGT 131751 28 92.9 0 ...........G.........C...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 33 GTCGGCCCCGCACCAGCGGGGGTGGTTC # Left flank : GACCGCACGTACCGCCTCGGCCCCCTTCGGCCATAATCGCTGAAAGGCTGGCGTCGCCTTCCCGCAATCGTGCACCCCACACAGCCAAGCGAAAAACCCGCGCCCCCGGCCCTCTCCCCCCGCAACATCGTCCAACACACCTTTGACAGACGGCGCCAGAAACCCGTCCCACATGCACTCAGCAACCGCCGCCGTATCCAGAAGATGCGACAGAAGGAGATTCTTCCTCCCACCCGCCTTCTCCTCGGACTTCCCCCAAAGCACCCCAAGGGCTGCCAAAACATCCAGGCCATCGCCAGACAAGGAACGCCCCACCACATCTCCCTCTCTGCTCCGTAAGCTAGTCGGGCACCCTAGCCCCCACCACTGACAGCACCCCCGAAATGACCACCAGAGCCCGCTCCCACCACCTCACCGACACAGACTCCGCCATCATGTGCGTCAGAATCGAACTAACTCAAAACAACCCTGATCACGGATAGAACCCCAGGCCAGCAAGT # Right flank : GAGGGTCCCGGGTCCGCGCGGCCATCCCGGGTGTCGACCCGACCTCGACTCCGTACCGGCCCATCTGGCTGCCGCGGCCCGGGCGTATCTGCGTCAGAAGTTCATGACGGTCCCGGTGGCCGTCTCCGGCGCCAACTTCGGCATCGCCGAGACCGGCACCCTGTCGGTGGTCGAGTCAGAGGGCAACGGCCGCATGTGTCTGACGATGCCCGACACCCTGATCACCGTCATGGGCATCGAGAAGGTGCTGCCGCGTTACCAGGATCTGGAAGTCTTCCTGCAGCTGCTGTCGCGCTCCTCGACCGGTGAGCGGTGAACCTGTACACCTCGATGTGGACCGGCGTGCCCCCGGGCGACGACCCGCAGGCGTTCCACTTGGTGCTCCTCGACAACGGGCGCACCGCGGCGCTCGCGCGTCGCCCCTGCTCCCGCGCGGGCGACCAAGGGCGGCTGAACCGCCGGGGGCGCGCCACGGGCCGGTCACCTCGCCGAACGCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCAGCGGGGGTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146153-142955 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDFG01000013.1 Streptomyces hygroscopicus subsp. hygroscopicus strain OsiSh-2 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 146152 29 96.6 32 ............................C CGCAGGAGCGGCCACGAGGTGCGGATCGTCGC 146091 29 100.0 32 ............................. GTGCTCCGCGCCGAGCCACCCTCCACATCGCA 146030 29 100.0 32 ............................. TGCACACGGACAGCCACGACGACAGCCAGGAA 145969 29 100.0 32 ............................. ACCAAGACGCTGACGACCGGCCCTCAGACCAT 145908 29 100.0 32 ............................. TTGGACGCGGTCGTACCGGGTCGGCGATAGGC 145847 29 100.0 32 ............................. GCACCTTGCCGTCGCGCTCGGGGACCAGGTGG 145786 29 96.6 32 ............................C GTCATGGCGAGCACGTACAGCGCGTACATGCG 145725 29 96.6 32 ............................C CCGGTCGCGGGTGAGGTCGCCGGATGCGATCA 145664 29 96.6 32 ............................C GCATACAGCCTGTGTCCCTCGGCCTCGTCGAG 145603 29 96.6 32 ............................C CTTCTTCGGAGGCACGTCCCTGGCGATGGTGA 145542 29 100.0 32 ............................. GCGCAGTCGGTGGCGCTGCGGACGCTGCTGCT 145481 29 96.6 32 ............................C GCAGATGTTCCAGACCTCCTCGCGGTCCGCCA 145420 29 100.0 32 ............................. CATTCCATCGCCAACCGGATTCCTTATCCCAC 145359 29 96.6 32 ............................T CGGCTCGAGCGACTGTTGCGCCTGCCGGGCTC 145298 29 100.0 32 ............................. ACCAACGAGCGGCTGAATGAGGCGTTGCAGGA 145237 29 100.0 32 ............................. TGGGCCCAGCGCACCGAGCCCGTCGACGGCGG 145176 29 96.6 32 ............................C CGACGCCGCAAGAACGCCTGATCCAAACCCGG 145115 29 96.6 32 ............................T CGTCCCCACCGAGGCACGCCGCATCCTGGATC 145054 29 100.0 32 ............................. AGTCCTGACCGCGTCAGCACAGCGCCCCCTCC 144993 29 100.0 32 ............................. ATGCTCGGCCAGGGCGGCCCCCAGGCCACCAA 144932 29 96.6 32 ............................C CCGGAGGGGTTCCGGTCGGAGGCGGAGGGCGG 144871 29 96.6 32 ............................C CTGTGGATGCGGTCGGCGAGCTCGCGCCGCTT 144810 29 96.6 32 ............................T ACGGCTTAGGTGGTGCCCAGGCCCCCTTTGGC 144749 29 96.6 32 ............................C CCGGACGCGCGGCCGGTGGGCTTGACCTTGAC 144688 29 96.6 32 ............................T GCAGGTGCCCCAACCCGGTGCCCCCCGAGACC 144627 29 96.6 32 ............................C TTCCAGGGCGCCCTGATCATGGGCATCGTCGA 144566 29 100.0 32 ............................. ACCGGCCACTGGTGGATTTCGCCTCCGCCCTG 144505 29 100.0 32 ............................. ACACCGCACACCACGTGTAGGGGCCCGACTGC 144444 29 100.0 90 ............................. CGCCGCCAGTCGTGGGGCACGTCCCCGCCCGGGTCGGCCCGCCAGCGGGGGTGGTTCGGCCGGTCTGGAGATCATGGAGGACGAGGCCGG 144325 29 96.6 32 ............................T TCGCCTACGAGTACGGCCGGCATCCCGAGACC 144264 29 100.0 32 ............................. ACCATCCAGATGGTGCCCGCCGAGGTCGCGGA 144203 29 96.6 32 ............................T GGTGGTCAGCGGCGAAATCGGCGAGAGCGGAG 144142 29 93.1 32 ....................A.......C CGGGCCAGCCAGTACGGCCCCTTCTGCGCCCG 144081 29 100.0 32 ............................. AGGGAGGCCGCGGCGGTCGGGCTCTTCGGTAC 144020 29 96.6 32 ............................C TGCGAGTCGTCGAACTACCGCTGGATCACGCC 143959 29 100.0 32 ............................. GTGTCGCGGCTGGAGACCGGCCGCCTGCACCG 143898 29 100.0 32 ............................. AGGGGAGCCGACGTGCTGAATGGTGCCATTCG 143837 29 96.6 32 ............................C TGTTCAGCAGGCCATTTTCGGCCCTGCTCGAC 143776 29 93.1 32 ......T.....................T TGATCACCGCGCTGTACGAGGAGGACGGCACG 143715 29 100.0 32 ............................. GAGATCGGCGTCCGCCCTGCCTGGCGCGGTAC 143654 29 96.6 34 ....................C........ GCGTTCGGCAACCCCACCCCCGACCCCACGCGGT 143591 28 96.6 32 ........-.................... CCGTAGAGCCCGCAGGTAGGCCCCCACGACCA 143531 29 96.6 32 ............................C GGACAGATCGATCAGCAGGTCCGGCAGCTCGC 143470 29 96.6 32 ....A........................ TTCACCACGACCGGCGGGGACATGAGGTGGCG 143409 29 96.6 32 .....................A....... GTGGGCGGCGCAGCGGACCGCATGGGTGACTC 143348 27 86.2 32 ..............G.......--....T ACGGGGTCCATACCGGAATTGGCCGCCACAGT 143289 29 93.1 32 ..............G......A....... CCGAGGCGTAGGGCTCTGCCGGACCGGCTTAT 143228 29 96.6 32 ............................C CACAGGCCCCGCGCTTCGAGCTCGCGGATCTC 143167 29 93.1 32 ....................A.......C ACCTGTCCTTCCTGCTCGGCGATCGTCACCGC 143106 29 96.6 32 ............................T GTCGGCCTGCTGCGTGGTAGTGGGCGGCTTGT 143045 29 96.6 32 .................C........... CCGACGCGGCCACCGTCACCCGCTGGTCCAAG 142984 29 93.1 0 .........................G..C | G [142958] ========== ====== ====== ====== ============================= ========================================================================================== ================== 52 29 97.3 33 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : CGGACAGCTTCATCGCGGGGCTGCGGGGTATGGAGTGCCTACATCCCGGCACTCCTCGACCAGCACATACAACTTTCCCGGCCAGCAGGTGTACATCACCCACCAGCTGCACCACGGCATCGCCAACGCCCGACCGCTACACCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCACCGCGACATACGCCGCCACCGCGACCACCGCGGCAGCATCCTTCACGAATACCAACGTGCAGCACTACTTACACGGATGAGCTATTCGGCAGGGAACAGAGCCACCGATTGCCAGCATGGGAGCGACCGGACACCCCGCTGCTCCGGCCTCCCCCGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTCGTCCTCACCACCGCGCTAGACGGCCCGCTGGCGCTGCTCACGCCAACCTCCAACTGAATGAAAACGGCGTTGACCGGGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : GGCAACAGTGTGGGGGGCCTTGAGGGGGCCGACGCCGTCGTGATCTCGAGGGCTGCGGTTCGATGGTGGACTTTGCCGTGTATACGAGCGTCTCGCGGCCAGGGTCGACAGATCCCGTTGAAACCCCAGGGTCACAGGGTCAGTCAGTGGATAGGTCAGACCCGCCGGGAGACGCTCCTGAATATCCTCCCTGTCAGTCGGGCAAGGCAGGCGCAGGCCGGCGCTCCGCAGGTGCATGCCGACGACCTACTGGTCTCAATCCCCGGCTGTCGGTGTTAGCGTCGGTTGCGGGCTGACAGCAGCAGGCCGTCGTAGTCGACGGGCCTCCAGCGGTCACGGCCCGCGGTGCGGACAGCCCAGCCCTGTTCGTTGGATGCGGGTTCGACGAGGACTGCTTGGCCGTCGCCGATGCGGGTGGCGAGGGTTTCCCAGAGGCGGTCGCGGATGCGGCGGCTGGGGTTGCCGACGAAGACTCCGGCGTTGACTTCGACCAGCCAGCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 152404-150245 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDFG01000013.1 Streptomyces hygroscopicus subsp. hygroscopicus strain OsiSh-2 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152403 29 96.6 32 ............................T CCGCACGTTCCGCCAGGACGGACGCCCTACAA 152342 29 100.0 32 ............................. GAACACAGTGACGATGGCCAGCGAGTCCTGTA 152281 29 100.0 32 ............................. TGCCGGGCCCGGGGCTGGGGGATGTACCACCA 152220 29 96.6 32 ............................T GCGGGGGTGGCCATGTTGACTCCTGTCGTGTC 152159 29 96.6 32 ............................T TTGGTATTGGCGGCGGTGGCCAGCCGCCGCTC 152098 29 96.6 32 ............................A TGCATTGCCAAACCCAATGTGTAGCCCCTGGA 152037 29 100.0 32 ............................. TCCGGCACGGGGATGCCGTAGTGGGCGGACAG 151976 29 96.6 32 ............................A CGGCGCAGGCCGCCCCGGCCAACACCGGCACC 151915 29 96.6 32 ............................C CGGCTGCCCCTCGCCACCCGCACCGGGCGACT 151854 29 96.6 32 ............................T CGGACGGCGCGCTTGCGCGCCTTCGGGCCGGG 151793 29 96.6 32 ............................A CCCAGGGAGTCACCTGGCTCGACCTCGGCCGC 151732 29 96.6 32 ............................C GCGTACCGCGCCCGCGCCGCCGCCGCCTCCTG 151671 29 96.6 32 ............................T CAGCGTCGCGATCTTGGTGAATGCAGTCATCT 151610 29 96.6 32 ............................T CGGGGCGTCCAGCCACTCCACGTCGGCCAACG 151549 29 100.0 32 ............................. CTCGGTTGCCAGCCGCCGTCGCGCGCTGAGCG 151488 29 96.6 32 ............................C TCGATGCCCAGGGTGCCGTCGTCGGCAATGGC 151427 28 96.6 32 .....................-....... AGGGCGAGCGCCGTACGGCCGCGCTGCTTGCC 151367 29 96.6 32 ............................C CCGTCCTGCGTCATGCCGACACCTCCCCGGCG 151306 29 100.0 32 ............................. GCTGGCGCGCAGGTGTTCGTCGGGGTCAGGGC 151245 29 100.0 32 ............................. CAGGCCGCACAGCAGCGGTACCGGCGCTTGGG 151184 29 100.0 32 ............................. GTGGTCAGGAGGTGCGGGATGCGGCCCGCGCT 151123 29 96.6 32 ............................T CTTGGTGTGTCCCCCCTGCGTCCCCCTTCGTC 151062 29 100.0 32 ............................. TGCGGCGGAGGGTCGTACGGCTCGGCAACGGC 151001 29 96.6 32 ............................C TGCGGCCCCACGCCCCTTTGCCCGGCCCGTCC 150940 29 96.6 31 ............................C GACGCACCAGCCGCGACCCGCTCGTCCTCTC 150880 29 96.6 32 ............................C CCCTGACGCCTCTTCGAACAGGTGGATGGGCT 150819 29 93.1 32 .............T..............T GAGACGATCTCCACCGTCGTCATGCCCGCGCA 150758 29 100.0 32 ............................. TACTGCCGCCTCACCGCCTGGACCGGCGCCAA 150697 29 96.6 32 ............................C GGACGGCGCCCGGGGGCCCGTCGCGTCCGGGG 150636 29 96.6 32 ............................C TCGGCCCCATCGCTGACTCGGTGGTACGACGG 150575 29 100.0 32 ............................. GCAGAGCCGTCTGCCTCCTCGAATGGGGATCC 150514 29 96.6 32 ............................C CGTAGGAGAGGGCCCCCATGGCCAACACGTTC 150453 29 96.6 32 ............................T GGGCCCACGGGCCGACGACATTGCCAACACGT 150392 29 93.1 29 .....T......................C GCGGAGGAGACCATGCGCGGGTCATCACC 150334 29 86.2 32 C...T.G.....................C AGCTCCGGGGTCACCCCGCTCAAGCGCACCTC 150273 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 97.2 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : GCGCCGGTGCGCCAGCCAGGTACGACGCCAGAACCTCGAGAATGACATCCCGGCACTCCTCGACCAGCACATACAACTCCCCAGCAAGCAGTTCCACATCACCCACCGGCCGCACCACGGCATCCGCCAACGCCCGACCGCTACACCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCGCCGCGACATACGCCGCCACGACCACCGCGGCAGCCTCCTTCGCGAATCCCAACGTGCAGTACACCTGCACGGATGAGGTATTCGGCAGGGACAGAGCCACCGATTGCCGGCATGGGAGGGACCTGGTCACCCCGCTGCTCCAGCCTCCCACGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTCGTCCTCACCACCACGCTAGACGGCCCACTGGCGCTGCTCACGCCAACCTCCAACTGAATGAAAACGGCATTGACCGGGAATAGAGTCCCAGGTCAGCAAGT # Right flank : CTCGCCGAGCTGGCGCGCGTCCTGCGGGTGCCGTCGGCCCCGGCCGGGCGGTGACCTGCTCGGCGGATCGTGCGGCCGGTGAAGACGGTGTGGGCCGGGATCTGTGTGACCTCCGCGTCCGAGATCAGCTCGCCGGTGTCAGGATCGATGACCACCCTCGGGTAGCGGACCGGTGTCCAGGCGCCCTCGGGTATAGCAGCGCTTGCGCGCTTGATGGAGGGGTTCATCCCCGTCGTGATCGAGAAGTGAGCATCGGCCCGGTGGCAGGCGGCCACCACGTCGGCGTTGCAGAACTGGCTGTCCGCGCGCAGGATGCGGGTGCCGGTGCAGCCGGCCTCGCCGGCGGTGGCCAGGGCTTCGGTGACGAACCGTTCGAACCCCGCGGGAGTCGGCTGACGTGCCCTGCCACAGCCGCACGGCGGCGATCACTGGCCGGGCGGTCGGGGTGCAGATCGTGGCCAGCAGCGGGTGCAACGTGCGGATCCCCTTGAACCGGCCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //