Array 1 28270-28629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080765.1 Aneurinibacillus thermoaerophilus strain CCM 8960 plasmid pAT1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28270 30 100.0 38 .............................. TTCGTATATAAGGGTTAAAGGGGTGGCGAATATGCGGA 28338 30 100.0 34 .............................. TGGAGTGGAAATAGACACAATAGATGCAGATAGA 28402 30 100.0 35 .............................. TCATTGATGAAGCTGGGATTCTGTTCAATAGTCGG 28467 30 100.0 37 .............................. TCGAGTGAAGCTTCTAGAATATGTTGAAGAATTTGGG 28534 30 100.0 36 .............................. TCGTCTTTACCCATGTGAAGGCGACCGTCTTATACT 28600 30 90.0 0 .................G...G..A..... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.3 36 GTTTGTAGCTTACCTATAAGGAATTGAAAC # Left flank : ACAAAAAGGAGGAAGAATACATGATTCCCGTTTCAAAAGCGGACAAAATCATCGCACTCATCCAAGCAGAGTGGAAAGAGAAGGACGAACAAATCAAACAATATCAGAAAATGTGGCAGGAGGAAAACGCGAAGCCGGACAAGTGTCAGCAAAAGCTGGACGAGTATCACAGAGCAGCCGAAGCGTTGCGTAAGGATAAGAAAGAGCTTGGTGAGCTGGCTGACGAGGTGAGGAAGGTGTCAGGTAGACGAGCGGCGAATAACTAACTATATAGGTCAAAATAAATAACGATTGTTGTCGATGTCGTCGACCTCTAATCCTGCAAAAAAGGCGGGGGATCGACGACATTTGATTTTGGTTTAAATATGTATAAACATTGAGGTTGGCGATAGGACGTAAAAAATAGCTTATCATATGGCGTATGTTTATATTTTGGTGTGAGAACTAAAAAAACGTTATGTCGCAAGGATTCTCATTATGTATGTTTTCATGTAAAATGG # Right flank : CAATCCTATAAATTGGCTTGACAAGTTATCGCTGCAACGATCTCACTAAAAAAGCTGAAGTTTTGTAACCAGAATTCAAGAAAGGGGTAAAAGATACCCCGCTATCCGGTCGTCCGGATGGCGGGGTGTTTTTATTTGTTGCGAACCGTGCTGACCAAATCAAAGTCGATATTCCTTTGTGCCAGCGGCTGCTTCTTCATACGTCTTGGGGGTACTCTCTTTAAAATATTCTGGAGATATTAAGAGATATTAAAGGCTGTCAACAAGGGTTGTCAGCACTGTCAATGCTGTCAACGCGCACTTGCTGATTCTGTAAGACTTTGACCGTAATATCGAGCACCATCTTCTCTACAATGCTTCTGAACGTTCCTTCTTCGAATGGACCATTTACCAGTGGCTCCCGATCGGTCGCTTCATCCCATTCGGTAATATCAGCGCGAACCAGTTCGCAGAAGACCTGTTCGTTGAAAAATTCAACGCTTTGTTGATGGAACTGGGAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 521518-524713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080764.1 Aneurinibacillus thermoaerophilus strain CCM 8960 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 521518 29 100.0 38 ............................. AATTTATCAAGTAATACCGTTCCGTCATCGAAGTAAAC 521585 29 100.0 36 ............................. TCACTTCTTATCTCATTTTGTTGTTCTTGTAGTTGA 521650 29 100.0 38 ............................. CAACCAAAACCGTCACAACAAGGGTCGAAGCAAGGCCA 521717 29 100.0 37 ............................. TTATACTTTCCCAAACGGACTGAATCACCATCTTAAT 521783 29 100.0 36 ............................. TTTCGTTAAAATTTCGTTAAACTTATGTTTTAATCT 521848 29 100.0 37 ............................. GAAGAGTACGCCAAAAATCCAGATTTACGAGCGTTCC 521914 29 100.0 39 ............................. TTTCGTTTTTCGTACGATTTTTCTAGTTTGGATTCGTAT 521982 29 100.0 36 ............................. GGCGAAAACAAGCTAATATACATCGACCAGGACAGC 522047 29 100.0 38 ............................. GTTCTTGCCTACAAGAATATTTTACCACAGAGCAGGGG 522114 29 100.0 36 ............................. TTGTAACTACACCTTGCACCGCGCTAATCGAACTAG 522179 29 100.0 38 ............................. ACGTTCTTCGTGGCCAATCATATAAACACGGGTTTTTG 522246 29 100.0 37 ............................. TTTTCAGTTGCGGCGACAGCCATTGGTGGTGCGCTTG 522312 29 100.0 37 ............................. CTACAAGCCCAAACCCTTTGCCTGCCATACCGCCCAA 522378 29 100.0 38 ............................. GAACCAGTTCCCGAACCAGAGCCGGTTCCGACTCCAGA 522445 29 100.0 35 ............................. TCTTTTTCGCCTCCTCTTCGTGTGAGGGAGTATGA 522509 29 100.0 37 ............................. CGTATTCGTCCTCTTCCGAAAAGTCATGCGGCACGAA 522575 29 100.0 38 ............................. TCGACTTCAAAACCGTTATCACGATGTACGAAAAGGAA 522642 29 100.0 36 ............................. CATAATATGCGTATAGCTGTCTCTAACATGCTTAAA 522707 29 100.0 38 ............................. TTTCCCCGAGTCCGAACGTTCAGCCTGCTCCGATACCG 522774 29 100.0 39 ............................. TCCTCTTTTATCTATACAATACACCATCCCCCTTTACTA 522842 29 100.0 35 ............................. GTTTCTTTGGCCACTCTTAGCTCGGTGTTGGTAGG 522906 29 100.0 38 ............................. CGAGAAAACGGGACTATCGAAAGACGCAATGAACCGAG 522973 29 100.0 37 ............................. GTTGCAGCGGTTACGTGCAGAGGAAGATGCCCGGAAG 523039 29 100.0 37 ............................. CATCGAATTTCCGCGCCATCTGACCGAATTGCTGTAG 523105 29 100.0 39 ............................. TATTGTAGTTATACACGTACGAGCCGTCTTCGTTGAACC 523173 29 100.0 36 ............................. ATAGGAATCGCAGTAACTGCTATAACGGCTCTTAGC 523238 29 100.0 37 ............................. TGGCGCGTAGCATTCGCGCTGCAGGCTGATGGCTGGT 523304 29 100.0 36 ............................. TTGCCTGCGTCAGTGTCTTTTTCAGCTCCGCCCACT 523369 29 100.0 35 ............................. GAATTTGCAATAACCTTTTCAATCATTTTGACTAG 523433 29 100.0 36 ............................. CTCGTTACACCTGTCAGTGTATTTCCGGACTTCCCA 523498 29 100.0 38 ............................. TTAAGGGATGCCATCCATTACGACAAGACGTTTTCCAA 523565 29 100.0 38 ............................. TTGATAGATTTACCGAGAAGTGGAACATTGTAGATTCA 523632 29 100.0 37 ............................. TCATAAAACCCCCGGTAAATATCAACGCCTCTATTTC 523698 29 100.0 36 ............................. TAAAGGAAGAGTGAAAGCGAAGGTCGATGAGATTGC 523763 29 100.0 36 ............................. TAGTGTAATGCGAGGGGAGTATTCCCCTTGCTCATA 523828 29 100.0 38 ............................. GTCGGTGAAGTCATGAGTTGGGTGAACTATTTTTTGCC 523895 29 100.0 36 ............................. ATGTTAATTTAATCTTAAAACTTTCTCCTAATTTTT 523960 29 100.0 36 ............................. TCGAATATGTATTTGTATTTTCAGCGGCGCTCGTGG 524025 29 100.0 38 ............................. AATTCGCCCTTTCAGACTTCTGAGTTTCGAAATGCTGT 524092 29 100.0 38 ............................. AAGCATTGAGTGGCGATTACATTTCGCTCAAGGAAAGA 524159 29 100.0 37 ............................. GGAGGCTTCTTGAAGAAATGAATCAGAAACCGACTCC 524225 29 100.0 39 ............................. TCAAAAGCTGAAAGAACATATTGAGATTTCCCACGAAGA 524293 29 100.0 36 ............................. GGAGAAGAAAGGACTTATCCGGCGTGATCCGACGAA 524358 29 100.0 36 ............................. CTGTGAACCCGGACACTTCGCGCAGACATTCTCCAA 524423 29 100.0 38 ............................. AGGCAAACTGAACGGAAACTTCGTAGTGAAAAGCGTCT 524490 29 100.0 35 ............................. TTGAGAGGATTTTTTAAACATAAAATCACAACGTA 524554 29 100.0 37 ............................. GCTACTTCGTCCGACTCTACTCCTAGCGATTCGTATG 524620 29 96.6 36 ............................A CAACTGTGAGCAAATACGGCAATTCACGAAATACCT 524685 29 93.1 0 .......................C....T | ========== ====== ====== ====== ============================= ======================================= ================== 49 29 99.8 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : AATGGGCACATCGAAGCGTTTCATCGCATCCTGGAAGATGAATGTCTGGCACGTTATGAGTTTATGTCCTATGCAGAGTCGTATCAAGTTGTAACAGATATCCGCTTTTATAACGAGAGACGAATCCATTCGAGCATTTGCGATTTAGCTCCACAAGAGTTTTATGCGCTTCAAACAGAACGTAAGTTCGTAATTAGAGAAGTGCGAGTATAAGCGAGGAATTTTACGAAAAAGGATGAATAAGGTTGTTTGTGTCCAAGTAATGGGGGTTAATCCGAAACCAATACTTGTGAATTTAATTTAGAAGAGAATGGGTAGTTTGCAGTGAAGATAGTTTTTGGTAGAATAAGCACAAAGCCTTGTGTGATAAGGTTTTCGTGCTTTTTTTTATAGAGTATGAAAATAGAATTGCCGGTTTACTGCAAAAAATGATTTTTGGTTGATTTGTTGGAACGTGAAAGGTTTGAGAAATAAAGGATTTTGGCTGCTTGGTTTTTAGG # Right flank : TCAAACTACTAAGATATCTAATCTGATGTTAGACTAAAAAGTGGACACACATTATGTATACATGAGTTGTTCGTATGAGAAGACAATATGATGAAGAATTCAAACGCCAAACCGCTCGCTATATTATATGAAGAGGGGAAGGGTGTCATTCAAGTAGCGGGAGAGTTGCAAATTAGTAAAAATACATGAATAACTGGGTGAAGAAGTATAAACAAGAACCTGAGATAGCAAGCAGAAATTCCGAAGCGAAAATCACCAGCTCTCCGAGCTTCAAAAGCGAATTCGTGACCTAGAAGAAGAAAATGCTATTTTTAAAAAAGGCCATGCACATCTTCGCCAAAGACCAGCGATAATTTTTGCCTTTATTCATCAACATCGCCACACGTTTCGGGTGGAGAAGATGTGCCGGGTGTTTCAAGTTTCCCGAAGCGGATATTACGTACATTCCTACTCGCGAAGGCTGGCTTTATTTAGCCAGTGTGATGGATTTATATTCCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 537029-541451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080764.1 Aneurinibacillus thermoaerophilus strain CCM 8960 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 537029 28 100.0 41 ............................ CGAAAAATACCGGCAGTGCGGTGCTCAACGGATTCACGCTC 537098 28 100.0 36 ............................ CTTTTAAGTGGACTATATGGGAGGACAGGTTCTCTT 537162 28 100.0 36 ............................ CCCACAAATTTCTTCCGGGCATCTTCCTCTGCACGT 537226 28 100.0 38 ............................ CGGGGCGTTTCTAGGATTTTCAAGATGATGTGAAAGGA 537292 28 100.0 36 ............................ CGGGGATACTTCTCAGGGAGAACGGAAGGCGTAGGA 537356 28 100.0 37 ............................ CTCTTCTTCTATTCAGATTCGTATGTACGAAAAAGAT 537421 28 100.0 37 ............................ CTCCGTAGAAACGTACCAGGTAAAAAAAGCGGGAGTA 537486 28 100.0 37 ............................ CTAGGGCTAGAGCAATTGAGCAGGCGGAGATTGCGAC 537551 28 100.0 39 ............................ CTGGGACGCATATTTCTTGCTCTCTATTATTGCATCTGA 537618 28 100.0 39 ............................ CTGTGATCATCGACGAAGCTGGGATTTTGTTCAATAGGT 537685 28 100.0 40 ............................ CACGTCACGCAAGAAATGGATTCAGTTCCTTGCACAGTCG 537753 28 100.0 39 ............................ CTGGGATGCGTATTTTCTTCTTTCTATCATTGCTTCTGA 537820 28 100.0 38 ............................ CGAGTTTGTGGTTTGGGTGAAGAGGAACGGGAGGAAGC 537886 28 100.0 38 ............................ CTTCATTTTTTCCTGGGGCATTTCTAGGATTTTCAGGA 537952 28 100.0 39 ............................ CATAATCTCCATTTCACTTCGTTACACATGCGTGTTTCA 538019 28 100.0 38 ............................ CTGGGACGCATATTTCTTGCTCTCTATTATTGCATCTG 538085 28 100.0 37 ............................ CCATAATATGCGTATAGCTGTCTCTAACATGCTTAAA 538150 28 100.0 36 ............................ CCCGTTTGCATCAGTACGGCCAGGATGAGCAGAAGC 538214 28 100.0 35 ............................ CTTTGTCCCGGCTTCCTATTCACGCCATGGCTGGC 538277 28 100.0 37 ............................ CTGTAATGTTGTAACTGACAAATATAAGCAGCAGGTA 538342 28 100.0 36 ............................ CTTTTGCTTTTTAGATAACTTTCTTTGTAGTTTTGC 538406 28 100.0 36 ............................ CAGAATCCGGGTCTGCCAGCATAACGAACGTCTTTC 538470 28 100.0 37 ............................ CTCGTTGCGGCTTCCAGCCTCGCCCGAATTTCTTTCA 538535 28 100.0 39 ............................ CAGTAACAGCCATGCTACCCTCCTTCTTCGACTGTTTGT 538602 28 100.0 36 ............................ CAGAAAATACGTTCGAATGAAGAGGCTCCACGGCGC 538666 28 100.0 39 ............................ CTTTCGTTTTTCGTACGATTTTTCTAGTTTGGATTCGTA 538733 28 100.0 39 ............................ CACTCTTCTTTCTTCTAAAGGTTGTGCACTATCTAATAG 538800 28 100.0 38 ............................ CTAGTTGGAAGGGAGACGAAAACCATGAATCAACCAAA 538866 28 100.0 39 ............................ CATGGGAGAACAGTCCGGAGGTGAGAAACTTTCCGATCG 538933 28 100.0 37 ............................ CGGTTAAACAAATTTATCCGGCGCAAATTGATGGTTC 538998 28 100.0 37 ............................ CTTTTCAATAACCGCGATATCTGTAGTCAATCCCCCG 539063 28 100.0 36 ............................ CGGCATCGGAGAGTATGATACTGCTGGCCAGTTTGA 539127 28 100.0 39 ............................ CTTTCGTCCCATCGTTCAAGCGTTCCGTCCGCTTTCTTA 539194 28 100.0 39 ............................ CAAGGCAGGAACGGACTGGGGAACTATTACGCACATAGG 539261 28 100.0 40 ............................ CTCGTGCTTTTGGCTTCGAATACGATAGACCGACCTGCAT 539329 28 100.0 38 ............................ CAGCGTATATGGAAGGACAGGCAACGTCTGACACAGGT 539395 28 100.0 39 ............................ CAGCGCTTATCCAGCAGGTCACCCCACTTTCCGATATAC 539462 28 100.0 38 ............................ CTATTTATGACATCATACGCTATCCGATCAACGCGCTA 539528 28 100.0 38 ............................ CCTGTCTTGTAGACTCCTTCTGTAAGTGTTGCTATATT 539594 28 100.0 38 ............................ CGTATCGAAGTGAAGGTTCAAGCATTGGAAGAGCAAGT 539660 28 100.0 39 ............................ TTTAGTTTCTCTTAATCTTTTTAAACGTTCACCAATCAC 539727 28 100.0 37 ............................ TACCGTTCGCAACAACTATTGCCGGGTCAGGAAAATG 539792 28 100.0 38 ............................ TTATCATAGCACCGTCTCGGTTCCACCAAACAAGGATA 539858 28 100.0 36 ............................ TGAGCTTTTGATTGCGAAATCTTTTGAAAATGATTG 539922 28 100.0 36 ............................ TCGGATAGCATCGCTGATATCGAGCATGCAAACTGT 539986 28 100.0 39 ............................ TCATCCTCCCTAGCTTCATATTTCCGGCAACTATTTTCC 540053 28 100.0 39 ............................ TTTTAAATGTGTCTAAAAAAGATCCAATACTAATTGCTC 540120 28 100.0 39 ............................ TGAATCTAAACCAACAAACAAAAAAGAAAATGATAAAAA 540187 28 100.0 38 ............................ TTGATATGTAACAATTGAACGCAAAGGGTCATATGGGA 540253 28 100.0 37 ............................ TTATGTATCAAGGGTTTGTGGCACTTGGTATATATTA 540318 28 100.0 40 ............................ TTTGCTTCATCCTTAGCTGCATCCAGTTGTTCAAGCAGTT 540386 28 100.0 38 ............................ TGGGACGCATATTTTCTTTTATCTATCGTTGCTTCTGA 540452 28 100.0 37 ............................ TACTTCCCCATTTCAGACAGATGATTTCAAGCAAGCC 540517 28 100.0 39 ............................ TTTTTGCTCTTTTCATTGCCGAGCCATACATAAGCTAAT 540584 28 100.0 36 ............................ TTCGCTTTGTTCCCGATTTTATAAACGATTGCCTCC 540648 28 100.0 36 ............................ TTCAAATTCTGGAGCTTCCAAGAATACTTCATCCTC 540712 28 100.0 40 ............................ TCTATCTTTGCTCTCTGATGATTTTTCTTCCCCTCCACCA 540780 28 100.0 37 ............................ TCGGGGGGGTTCCCTACCGCGTGCGCTCCGTTCCAGG 540845 28 100.0 38 ............................ TTATTAAAATACGGGTTTCTCCGGTATCCTTCATAAAA 540911 28 100.0 41 ............................ TTAGCCCGGCGCATAACGCCAAGGTGGGCGGTTCAAAAACG 540980 28 100.0 39 ............................ TTGATTTCTGCATCTGTTATCGTGCGGAATGTTAAGTTA 541047 28 100.0 36 ............................ TTCATACATTCGCACGAAACTACATCTTGAATGGCG 541111 28 82.1 34 ...................TT.GG...C GAAGTGCGGATGATGAAAAGAGCATGGATTCGCG 541173 28 82.1 26 ...................TT.GG...C GAATATGTTTCGCGCGCTTCATTTAA Deletion [541227] 541227 28 100.0 39 ............................ TTTGCATAGCGTGGGATTACCGCATCCGGATGCAGACGC 541294 28 100.0 36 ............................ TTGCTCTTCCGGCGTCTGTGCTTTCTTTTCTGACGT 541358 28 100.0 38 ............................ TCTATATAAGGCACGCATACGCGGCCAGTTTTAGGTAA 541424 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 68 28 99.5 38 GTTTTATATGAACGTAGTGGGATATAAA # Left flank : TAAACCGCTAAAGGCATGGTGGTAGAAGATGTTTGTAATTGTGACATACGATGTGGGTGAGAAGCGGGTACATAAAGTATGCAAGAAGTTGAAACAATATTTGATGTGGACGCAGAATTCGGTGTTTGAAGGCGAAATTACAAAGGGAAAGTTAGTGAAGTGTCTGACGGAATTGGAGAAGATAATGGATAAGCGGGAAGATTCGATTTATGTATATGAGGTGCAAAATCCGAGAAATATCGTGAAGCGGGTGTATGGACAGGAGAAAAGTTTTGAGGAGATGTTTTTATAGTATGTAAGGGAAGTTTTAGAAGGGTTTGCAGTAAACCGGGTTTTTAGATAGAGTGAGTATGAAAACGTATATCGCAATGGTTTTGGCCTTTTTTTCTGTGAGGTTAAAAATAGAATTGCTGGCTTACTGCAAAAAAGCTGATTTTTGATTGTTTTTTAGGTGATAAAGACCCCGGCAAATTAATGATTTTCGCTGTTTTATTTTTAGG # Right flank : AGAAGCGATGTGGAGGACTCTGTAGATTTAAAAGCAATCGTATGCTGTGTACCGGCGGAAACTCCGCAGGATGTGGTGTGGGCATTAAAGGAAAAGAAAAAAACAGCCAAAATTTTTCGGCTGAGATTATGCGGTTACTCACTGTAGCAATCCGTACAGAATCAGACCCTTATACTGTGACATTTCCAATGCCGCAAGAAATACCAGATGATGTATTGCAATGGGTAAAAGAAGATGAAAACAAGAAAATGTTAGGCCGATTCATATACGCGGCACTCACCGGGTTACAGGGACAAATGCCGGGAACATTTCAACAAACAAAGCCAGAAAAGAGTAAAGAAAAGATGGAGGCGGACGAAGCGGCCCGGAAAGCAGCGGCCATGTTTTTAAATGACGATGAATAGAAAAAATCTTACCCGGTAGAAATCTAAAAATCTACTATTCTACCGGGTTATTTCTTGTTTTACCCGGTGAATGTATGGCCGTATCTTCTATGGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACGTAGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 1881653-1884209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080764.1 Aneurinibacillus thermoaerophilus strain CCM 8960 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1881653 29 100.0 39 ............................. TGTACAATTTGAAGAAGAGAGGTGAGATATGTGACTTTA 1881721 29 100.0 35 ............................. TATGGCATTCATTCCCTTATCTACAAACTGACCAA 1881785 29 100.0 36 ............................. CCAAAGGGAATTCCAGGCACGCTGAGGTAAAGTCTT 1881850 29 100.0 37 ............................. GCCGGACCGCTGGCTACTCCACCGAAACCTTTAATAT 1881916 29 100.0 35 ............................. GCTAGTGAAAATCCTTGCGAGCAACGCCGTATACC 1881980 29 100.0 36 ............................. CCGCATACTTAAATGCATATTGCATGTCTAGAATAC 1882045 29 100.0 37 ............................. TGTGTTTTTCCGCCCGTTCTTGCACACTGTAAGCAAA 1882111 29 100.0 38 ............................. GCGTACTCATAGCTACGCCTCCTCTTTACTAGATTCCG 1882178 29 100.0 37 ............................. CTTGTCGTTCATCACTCTCATACTTAGAAAGTGTTGA 1882244 29 100.0 35 ............................. CACTAGAAGCGAATAAAACAGCGTCACAATGGCGT 1882308 29 100.0 40 ............................. GGTAAGTAAGGAAGGAAGCCACAAATGTGGACTTCCTTCC 1882377 29 100.0 37 ............................. CTGTTATGCTATTAACGCATAACGCAGAAATGATAGA 1882443 29 100.0 37 ............................. CTGTTATGCTATTAACGCATAACGCAGAAATGATAGA 1882509 29 100.0 36 ............................. CAAATTAAAAATTTCCGATAACAAACTCACTATAGC 1882574 29 100.0 38 ............................. TCCCACGAGCGCCGCTGAAAATACAAATACATATTCGA 1882641 29 100.0 38 ............................. AAAAGTCAGGGCATCGCCCTGTAAGATAGTAATAGTAA 1882708 29 100.0 37 ............................. TCCTGGCCGCGTAGAGGCTCTATAGCAGCCCATACTG 1882774 29 100.0 37 ............................. CAAGTTTATGTCCAAACAGTTCAGCTTGAATAGCAAG 1882840 29 100.0 36 ............................. CAGTACTGGAAATGATGGTAACGATGGGCTGACTGC 1882905 29 100.0 38 ............................. ACCGGCTCAGGAGCAGGTTCGGGAACTGGTTCAGGAAA 1882972 29 100.0 37 ............................. GTAAATTTAACGAAATGGTAACGAAAGTTCGTGTAAC 1883038 29 100.0 39 ............................. TTCGCGCCATTCATGCGATCCTAAATAAAAGTTTAAAAA 1883106 29 100.0 40 ............................. TGGAGCGATTGGATCATATGAAAGACCACGAACAGAATCC 1883175 29 100.0 37 ............................. TCATGTGTTCTAGGTTGGTTTGGTTTGCGCTCGTCAA 1883241 29 100.0 36 ............................. CAGTTTTACCGCTTGAGCAATACGGACGCAAAATCA 1883306 29 100.0 38 ............................. TCGTAACTCATGCGTTAATCACCTCGCTAATTGGACGG 1883373 29 100.0 37 ............................. AGTTAGATTTACGACAACAGGACGCGGCCCTACTACT 1883439 29 100.0 39 ............................. GGAGATTGCAAAAAAAATGGCAGAAGCCAGAAAGGTATT 1883507 29 100.0 41 ............................. CATACCTAGCAGCATCAATAGCATGATTATTCTTATCTTCA 1883577 29 100.0 38 ............................. ACACGCAAGATCGTTGAGCGTCATCGTCGTTTAGGCGT 1883644 29 100.0 38 ............................. ACGTTTGCGGGCGTTTCAGGGCAGACAGGGCGGGCATA 1883711 29 100.0 39 ............................. TGCAGATCAATAGCTATTTGCCGTTCCTGCTCTTTCACA 1883779 29 100.0 39 ............................. TCTTAAAACAACACCTGGTCAATATAACCTGTCTGTACT 1883847 29 100.0 40 ............................. TTACCTACACCTCAAGTACACATTCGTTCGGGTTTTTGTC 1883916 29 100.0 39 ............................. GTGCATATTTTGCGGATGATTTGCGTAGCGGTCATATTG 1883984 29 100.0 36 ............................. TTAGGGTACTCATCATATGTTTGTTCATCAAGAATA 1884049 29 100.0 38 ............................. GCAAACTCGTATACTGCTTCGTCTGGAATTGTATATTG 1884116 29 100.0 36 ............................. GACGATAGTGTTAACGATGCCATCCGTGATTACCTT 1884181 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 39 29 100.0 38 CTTTATATCCCACTACGTTCAGATAAAAC # Left flank : TCAAGCGACGAACAAGAAGTGGTTGCAATACCTTCTAGAATACGAGCAAACAGGGAATAAATCATCGCTGGATAATTAAGCGATTGAGGCGCACCTTCACATACTTTTTTAGACACAATTTTAAGCAGAGGCATAATATTGATGCCTTCAAAAATTGCTGTGTAGTGCTCAGTAGGTTCTAAATCTAATAAGTCTTGCAGGGAAAATAAATGTCCTTGACGAATAGAGTACATGAGGAGTCCAACCTTTCTCATTGAGTTGTTTGAGCAACTACTCTATTCGAGATTTAGGGAGGTACTCCTTTTTTCATGTCTATTGAACCTTACGGTTCAAGGGCTTTGAGTTATGAAATTGATTCATTCGGGAAAATTGTACGCTTATATAAACGAACAATGAACATTTCATAGCGTATCCACCAAGTTAAAAGTTCTGGAAGCCAGAACTCTACTGTTTAAAATATTTACTTTGCCCCTGGTTACAGCAACGCTGGTACTGGGCCA # Right flank : CCCTAAAAACCAAGCAGCCAAAATCCTTTATTTCTCAAACCTTTCACGTTCCAACAAATCAACCAAAAATCATTTTTTGCAGTAAACCGGCAATTCTATTTTCATACTCTATAAAAAAAGCACGAAAACCTTATCACACAAGGCTTTGTGCTTATTCTACCAAAAACTATCTTCACTGCAAACTACCCATTCTCTTCTAAATTAAATTCACAAGTATTGGTTTCGGATTAACCCCCATTACTTGGACACAAACAACCTTATTCATCCTTTTTCGTAAAATTCCTCGCTTATACTCGCACTTCTCTAATTACGAACTTACGTTCTGTTTGAAGCGCATAAAACTCTTGTGGAGCTAAATCGCAAATGCTCGAATGGATTCGTCTCTCGTTATAAAAGCGGATAAACTCTGTTACAACTTGATACGCCTCTGCATAGGACATAAACTCATAACGTGCCAGACATTCATCTTCCAGGATGCGATGAAACGCTTCGATGTGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACTACGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2019422-2019195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080764.1 Aneurinibacillus thermoaerophilus strain CCM 8960 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2019421 31 96.8 33 ..............................C TTTCGCAATTTCCATCCCGTCCCAATAGGTTAA 2019357 31 100.0 35 ............................... GATGTTCCAAAAAGTTTGGATGACATTCCAGAAGA 2019291 31 100.0 35 ............................... CGTATACTTCGCCAATTCCGCGACCGCGCTCCCCG 2019225 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 GTTTGTAGCTTACCTATGAGGAATTGAAACT # Left flank : GAATAGGCACCCACGCGGTGCTTTTTATTTTGCTTTGGAGGTGAATGGCAACATGGAAATACGGAAAGTACCAGTAAGTAGCATTAACCCAGCGCAGTATAATCCACGTGTTGAACTGTAGCCTGGAGATGAAGAGTACGAGAAGATGAATCGGAGATTCGCTTATCTGTTTCTCATTTTTTTGAATTTATTCATTCGTGTCCTGAGAAAGTATTATCCAGAATTGGTTGTTTGAAACATCGAAATCTCAAAGCAAATTTATATAACGATATAGGTCAAAATAAATAACGATTGTTGTCGATGTCGTCGACATCTAATCCTGCAAAAAAGGTGGGGGATCGACGACATGTGGTTTTGGTTTAAATACGTATAAACATGGAAGTTGGCGATAGGACGTAAAAAATAGCTTATCATATGGCGTATGTTTATATTTTGGTGTGAGAACTAAAAAAACGTTATGCCGCAAGGGTTCTCATTATGTATGTTTTCATGTAAAATGG # Right flank : GATTTATAGAGACTTAAATGGTATCATTAATCATCATTAGATTTATTTGAACGTAGTGGGATATAAAGTTTAACAGTTGTACTTTGTAGTAATTATCTGAACGTAGTGGGAAGAAGGTCGCTGCTTATAGTAGCGGCTTTTTATTTAGAAAAATTTCCCTCATTCCTATCGTAAGAGGGCTTGGGATGTTTAGCTTTTGTACGAGCGAGTGAAAGAGAAGACCCGGCGCAAGGCCGGGTTTTTGTTTGATCACATTTTTGACCACATACTTAGTTTATTTCTTTCCTTTTTATTCTCTCTCCTCTTGCAAAAACTTGAGATAAACAGAGATATTTAATTTTATTTACCTTTGTTTTTCCAAATTGTTTCGCAACCCTTATTCTTATAACATAAAGCAAAAAAATGCTTCGGAGAGAGGAAACGCTTGATATATAAGATTTTTTCTCCTTGCGCTGAAGCTCCGCGAGCTTCTTGTTACGCAGGCGGTGAATGCTTCGACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATGAGGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //