Array 1 105390-105966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMN01000005.1 Salmonella enterica subsp. enterica serovar Cubana strain BCW_1606 NODE_5_length_233146_cov_2.70655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105390 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 105451 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 105512 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 105573 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 105634 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 105695 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 105756 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 105817 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 105878 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 105939 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123200-125306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMN01000005.1 Salmonella enterica subsp. enterica serovar Cubana strain BCW_1606 NODE_5_length_233146_cov_2.70655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 123200 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 123261 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 123322 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 123383 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 123444 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 123505 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 123566 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 123627 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 123688 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 123749 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 123810 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 123871 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 123932 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 123993 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 124054 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 124115 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 124176 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 124237 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 124298 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 124359 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 124420 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 124481 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 124545 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 124606 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 124667 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 124728 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 124789 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 124850 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 124911 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 124972 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 125033 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 125094 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 125155 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 125216 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 125277 29 93.1 0 A...........T................ | A [125303] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //