Array 1 113643-111109 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNK01000003.1 Streptococcus oralis strain BCC59 D8862_contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 113642 28 100.0 33 ............................ TGGTATTGAAGTCTTAGAAGAAAACATAAATAA 113581 28 100.0 33 ............................ TTAAATAGTAGTGGAATAAATCCTATTGTAAAA 113520 28 100.0 33 ............................ TAGTTCAAATCCTCCGTGGACATGGATTGAACG 113459 28 100.0 34 ............................ CAAAGACGACTTCCTGCAGCACGCTAAAGAGGAG 113397 28 100.0 33 ............................ TACTATGGACCGTCTATCAATTTTTCCGTTCAG 113336 28 100.0 33 ............................ CACGCTACAAGAGATGGGAGTGTTGTAAATGGA 113275 28 100.0 33 ............................ TACGCTGCTTCCGTCCAGCAACGTTGACGTTCC 113214 28 100.0 33 ............................ TAATATTTTCAACTTTTAGATGTTGGTAAATCG 113153 28 100.0 33 ............................ TAGTGCAAGTGATAAACTTAATAAGAAAGTAAA 113092 28 100.0 33 ............................ TATCGCTACTGGTAATATCAATATTTTCGGTGG 113031 28 100.0 33 ............................ TGCACTCTATGGAAAATTTGGTGCTAAAATCAT 112970 28 100.0 34 ............................ TGATTGAACCATTTTCCAGCTATCTAGCCAGAAA 112908 28 100.0 33 ............................ TAGAAAATCTGCTTTCAAACATTGTCTAATCGT 112847 28 100.0 33 ............................ TAAAAGAAAGGATTTTATAAGATGATAGGTTAG 112786 28 100.0 33 ............................ TGGCACATCGTCAAAATCTTCATAATCTGTAAT 112725 28 100.0 33 ............................ TTGATTGTTTCTGATGATAATAGTTCATAAGTA 112664 28 100.0 33 ............................ TGGAATAGAAGCGGTAAAAGATTTATATTCGTA 112603 28 100.0 33 ............................ TAGTTCATAAGTATAACAGCACATTTCATCTAA 112542 28 100.0 33 ............................ TAAGGATAAGATGGTGCACATGGAATCAATCAG 112481 28 100.0 33 ............................ TACGCGAGAAACAGGTAATAAGGCGCAAGAAAA 112420 28 100.0 33 ............................ CCTCATTTCTAACTATATACATTGTACCATTTA 112359 28 100.0 33 ............................ CATACCGACAAAAAAGTTATTGTTTGAGTACTC 112298 28 100.0 34 ............................ TGATGCAGAGGCTAGTTATGTACAATCTCATAAA 112236 28 100.0 33 ............................ TGAAACCTAAAGAAAGCAAGGTTGTCATACTAA 112175 28 100.0 33 ............................ CTGAAGCACTCAGTTTTATCCGTTTTAAAATTG 112114 28 100.0 33 ............................ TAAAGGGAGGTACTCTTATTTATGAAACTACTT 112053 28 100.0 33 ............................ TAAGTGATTAGCGGTTCCTTCTACCCATGGATC 111992 28 100.0 33 ............................ TGGACGGATTATCCGTCAAGGAAACATGTATAG 111931 28 100.0 33 ............................ CGTCCACCTCATAGATGATTCTAGTCGCGTCTT 111870 28 100.0 33 ............................ CAAATGACAAGCCGCTTAAAGGACAAGTACAAG 111809 28 100.0 33 ............................ CAGGTCAAGAGGGCATCGTAGCGCAACAATTAG 111748 28 100.0 33 ............................ CTAATTTTAGGTACTTGTCGAACTACTGTCGCA 111687 28 100.0 33 ............................ CGTCATCGCTGCTTCAATAACTTTAGTTAAGTC 111626 28 96.4 33 .............A.............. TGTATAATTCGTCGAAATTGTAATGTTGCCATG 111565 28 96.4 33 .............A.............. TTGAAAAAATTCGTTGACAGTTACATGAGCGCA 111504 28 92.9 33 .............AT............. TGCAACTCTATCCATCAACATTCTCACACGGTA 111443 28 92.9 33 .............AT............. TTTAAGGCATCTGCCAATAAACGGCTTGACAAT 111382 28 92.9 33 .............AT............. GTAATCGACTATATTTTTGACGGTTTAGAATTG 111321 28 92.9 33 .............AT............. TGCTGTCAATGCCGTGGAGCAGGTCGCAGCTGA 111260 28 92.9 33 .............AT............. CGCAGTCAACCACACTGACGGCTAGCGTGCCAG 111199 28 92.9 33 .............AT............. CTAATTTTCTCGGCTACGTCAAAGCCATTGAAG 111138 28 82.1 0 .............AT..........CTA | TA [111112] ========== ====== ====== ====== ============================ ================================== ================== 42 28 98.4 33 GTTTTTCCCGCACTCGCGGGGGTGATCC # Left flank : AGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGGCTCTATTAGAACAAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTGGGTTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAAGAGGTAGTTCCTCATAGAGCTTTACCGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGGGATTAAGCGATTTCAATGGGATCTTTTAGT # Right flank : CATAAAATGAGATATAAGAAAAATATTCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAACATATTTTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTAAATTGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTTTAGAAGAGTATAAGAAAATTTGTCTTGTATCTGTTGTCTTAAAGTGTTTCAGAACTAAATGCTCAATATTTTTCGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCTTGGCTCTCCTAGCTGGTGCTAGTGAGACCGAGGTTGCTCCCCTGGTCGAGCGCCTCATCGCTGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTAGAAAACTTACGATCATAAAAAAACTCAGATCAATTGATCTGAGTTTTTTGTAGTTAAATACTTTTTCCTGGTAATAATGTAACTGGTAAGAAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACTCGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //