Array 1 67077-65337 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFQ01000015.1 Salmonella enterica subsp. enterica serovar Hadar strain 3125 3125_15_length_91023_cov_33.8993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67076 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 67015 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 66954 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 66893 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 66832 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 66771 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 66710 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 66649 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 66588 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 66527 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 66466 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 66405 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 66344 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 66283 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 66222 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 66161 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 66100 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 66039 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 65977 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 65915 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 65854 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 65793 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 65732 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 65671 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 65610 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 65549 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 65488 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 65427 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 65366 29 100.0 0 ............................. | A [65339] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85616-83758 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFQ01000015.1 Salmonella enterica subsp. enterica serovar Hadar strain 3125 3125_15_length_91023_cov_33.8993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85615 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 85554 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 85493 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 85432 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 85371 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 85310 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 85249 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 85188 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 85127 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 85066 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 85005 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 84944 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 84883 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 84822 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 84761 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 84700 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 84639 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 84578 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 84517 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 84456 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 84395 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 84334 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 84273 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 84212 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 84151 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 84090 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 84029 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 83968 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 83907 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 83846 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 83785 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //