Array 1 413014-414384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 413014 29 100.0 32 ............................. TCAGCTGCTTGGTCATTTGCCATACCACGAAT 413075 29 100.0 32 ............................. ACAAACATGTCATCTGTTTGCTGATAATATCT 413136 29 100.0 32 ............................. GTATTGGGATGACAATAAAAAACCCGGCTTGC 413197 29 100.0 32 ............................. TCCGTATCAGTTTGTCCCGCCGCACGCTTAAT 413258 29 100.0 32 ............................. TCTTTAATGCCCATGTCGTGGTTTCAAGACGA 413319 29 100.0 32 ............................. AAAACGTGTTTGATAGCGGCGTTGATTAATGC 413380 29 100.0 32 ............................. GCCATACTCCGATATTGTCCTCTGCCATCCTC 413441 29 100.0 31 ............................. CAAGTTGCGTTGATTCTGACGCAAAAGAAAA 413501 29 100.0 32 ............................. GAGAAAGCCTCGGATGGCCGGTTAACAAAATT 413562 29 100.0 32 ............................. ACGGGAAGCCGGGCTGTTTACTGGCTGAATGA 413623 29 100.0 32 ............................. TTACCGTTGAATGTTCAACTGTTTGTTGAAAG 413684 29 100.0 32 ............................. CGGGTCTTTTAGGTGTGATGGGGTGGTGTGAT 413745 29 96.6 32 ............................A GAGACATTACGTTTCAGTGTCTGCGGGTGGTG 413806 29 100.0 32 ............................. TGCTCTCTGGATGTCCAGAATTTCCCGCGCTT 413867 29 100.0 32 ............................. GGCAGCAGAGTGCTCAAGCCCATCATGTTGGC 413928 29 96.6 32 ............T................ CATGGCTAACTTATCACTTAATCCGATGGCGA 413989 29 100.0 32 ............................. CGCGCTGAACTCAACGGGAAACCACATCAGGC 414050 29 100.0 32 ............................. CGCGCTGAACTCAACGGGAAACCACATCAGGC 414111 29 100.0 32 ............................. AATTCAGGGTCATCTCGATGTACTATGATCTC 414172 29 100.0 32 ............................. CAGGCCGGATTATTCCAGACAATTCTAGGAGT 414233 29 93.1 32 ........T....T............... TTCAAAACTCAAAGGCTCGCTTCTGCGGGCCT 414294 29 96.6 32 .............T............... CTCCAGCGCAGCGCGGCGGAATTTACTATGAC 414355 29 89.7 0 ..A......A.................A. | G [414380] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTTGAGTTCCAAACCTACGGTGAAAACCGCCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGTAAAATCGGTAGAATTTTACGGCCTTAAAAATACCTTATAAAACAGGTATATACTTTTAGA # Right flank : GAAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCTGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATGCCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 674281-674736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 674281 29 100.0 32 ............................. CGGTTTCGGGCCTGACGGCTAGAGTCTGATGG 674342 29 100.0 32 ............................. GGTTGCGCTATGACATTGCCGCGCCCGATACG 674403 29 100.0 32 ............................. TTTGCGTGATACCGTTAATAGCAGCAGTGCTG 674464 29 100.0 32 ............................. TACGGCGCACCGGCGCTGGCAGCAATAACCGC 674525 29 100.0 32 ............................. CTAAATCGCCATTTACCAGCGTCATGTTTAAT 674586 29 100.0 32 ............................. GAAATCGATTCGGTCAGCCTGCCGTTATTACA 674647 29 96.6 32 ............T................ ATCAGCTCCAGCGTGTTTTTCCAGCCGCCCAG 674708 29 82.8 0 ............TT...........G.GT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACGTCGGTAGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATCACCACCTTTATTTATCAATCGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATGTGTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAACGCGGCCATCGCTTATGGTGCTGACGAGGTCGACG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3664062-3664991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3664062 28 100.0 32 ............................ ACCATGTGATAGAGTCAATAGTTTTCTGGATC 3664122 28 100.0 33 ............................ CGCTGGGAGGCGGCGCAGAAAGTCAATAACGCC 3664183 28 100.0 33 ............................ GCCAAGGCAACCCAATAACACCTGTTCTCCGAC 3664244 28 100.0 32 ............................ GGAAATCGGTAATTTCCCTATCCGATCCAATC 3664304 28 100.0 32 ............................ GGACGTGGAAAATGACACTGACGGAACGGAGG 3664364 28 100.0 32 ............................ TGATTTTTATTGAATAACATAGTTGGCTCCAA 3664424 28 100.0 32 ............................ TTGATACCTACTGGTTTATCCGGCAGTGGAAG 3664484 28 100.0 32 ............................ AACCGCACCAACAGCCGCCGTTGGAACGGGTA 3664544 28 100.0 32 ............................ AATGCGCCGCTACCGGCCGCTTGTACCAACGT 3664604 28 100.0 32 ............................ GGCATCGAACTCCAGCCGCCGGTGACTGATCA 3664664 28 100.0 32 ............................ TGACCGAAAGATTGGTCGCCATCGCCCGCGCC 3664724 28 96.4 32 ...........T................ TCGACCCCGGCTCGGCTAACACTGCGGGCATG 3664784 28 96.4 32 ............G............... TGAGTTACCAGCAGTGATGATGAATTAATCAT 3664844 28 100.0 32 ............................ TGTGCTGGATAGGTCATATTCAAATCTGGGCA 3664904 28 100.0 32 ............................ TATCGCTGTTTGAAACCAAGCTAACGCTGGAA 3664964 27 82.1 0 ...........T.........G.-..CG | G [3664985] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACACCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAAAACCGCTTTTTCATAAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTCGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTAAAAAAAGGGTTTCACGACCCAAAATGCGACTTTTTCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCGCCCCCAACATAAATCAGGCCACAGCAAAATTCTTGCTGTTTACCAACAGCCCCAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGACATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3670477-3670030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3670476 28 96.4 32 .............C.............. TGGTTTCACCGGCACTGACTGCTCTGAAAGAT 3670416 28 100.0 31 ............................ TCCCTGCGGGGAGAATCTTGTAGTCTGTGCG 3670357 28 100.0 32 ............................ GAGGTCATTAAAGCCGTTCGGGAAACCAGCAA 3670297 28 100.0 32 ............................ GTTGACGATGGCAGTGCAGATGAACGTACCGT 3670237 28 92.9 32 ...........AG............... GTGCACAGATGGCGGCGTGATAAATGGGAAAT 3670177 28 100.0 32 ............................ CAGGAATAACCGTTTCCCCAGCCAAGAATGTG 3670117 28 100.0 31 ............................ ATAAAAACTCGGTGAGTTCTATCGGACGAGC 3670058 27 85.7 0 .............C.........-..CG | GG [3670035] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGTTTACTGGCTGAATGACTGCGCATCAGTTCACTGCCGCACAGGCAGCTTAGAAACTAGCCGCTCGCAGCGTAATTCCATCCAGACTGTTCACTGCCGCACAGGCAGCTTAGAAAGCAAAAGTACGAGTTAACCGTTACCACGATCAGTTCACTGCCGCACAGGCAGCTTAGAAAACATCTATGTTGCAATCATGCCGCCACAAATCGTTCACTGCCGCACAGGCAGCTTAGAAATCAACAGGTACGCCGACCGCTCCCACGGCAACAGTTCACTGCCGCACAGGCAGCTTAGAAAATGGGGAAAGACGTATGGCGTGTCAATCAGGTCGTTCACTGCCGCACAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAGAAAAAGCCGATCAACTAACTGGGCGCTATACCAGA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGAGCGATGAAATAGTAGAGAAGCGCGATTGTCTATCCCGCACGAAACCACCCACCAGCCTGATATATATCGCTAATCAATAACAAAACACTCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCAGCAGCGACGCGTTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATGAGATACACGCCGAACTCTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3671248-3670618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3671247 28 100.0 32 ............................ AGCCTATGAACCAACTGGTGATGTGCATGACT 3671187 28 100.0 32 ............................ AATTTTGTCAAAAATACGACAAATGGGCTAAT 3671127 28 100.0 32 ............................ AGAGGCGCGGCTGTCAGATATGACAGCACGTT 3671067 28 100.0 32 ............................ TCAAATCGGCGTATTACTGACAACACCGCCAT 3671007 28 100.0 32 ............................ GGGCTGTTTACTGGCTGAATGACTGCGCATCA 3670947 28 100.0 32 ............................ CTAGCCGCTCGCAGCGTAATTCCATCCAGACT 3670887 28 100.0 32 ............................ GCAAAAGTACGAGTTAACCGTTACCACGATCA 3670827 28 100.0 32 ............................ ACATCTATGTTGCAATCATGCCGCCACAAATC 3670767 28 100.0 33 ............................ TCAACAGGTACGCCGACCGCTCCCACGGCAACA 3670706 28 100.0 33 ............................ ATGGGGAAAGACGTATGGCGTGTCAATCAGGTC 3670645 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGGCACTGACGGCGCTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGCACTACCGGTACCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGTGCGGTGAACAAGGGCTGGCTGACCGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGAGCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAGGGTTTTTTCGGGGAAACGGCGATTTTTCTTTAACAATCAGACGATAAGCGATTATTCGCTACA # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAGAAAAAGCCGATCAACTAACTGGGCGCTATACCAGAGTTCACTGCCGCACAGGCAGCTTAGAAATGGTTTCACCGGCACTGACTGCTCTGAAAGATGTTCACTGCCGCATAGGCAGCTTAGAAATCCCTGCGGGGAGAATCTTGTAGTCTGTGCGGTTCACTGCCGCATAGGCAGCTTAGAAAGAGGTCATTAAAGCCGTTCGGGAAACCAGCAAGTTCACTGCCGCATAGGCAGCTTAGAAAGTTGACGATGGCAGTGCAGATGAACGTACCGTGTTCACTGCCGAGTAGGCAGCTTAGAAAGTGCACAGATGGCGGCGTGATAAATGGGAAATGTTCACTGCCGCATAGGCAGCTTAGAAACAGGAATAACCGTTTCCCCAGCCAAGAATGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3680196-3680704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3680196 28 100.0 32 ............................ AGTGATGGTGTTCAGCAACAGGCGACGATTGC 3680256 28 100.0 32 ............................ TCAAATGACAGTGGATTAATCAGGCGTTGCCC 3680316 28 100.0 32 ............................ CATACCTGCTGGACGACCGGACCTGCTTTATC 3680376 28 100.0 32 ............................ AGGTCATCACCGATCAGTACTTCGACGAGATC 3680436 28 100.0 33 ............................ CATTACCATGGCGACCGCCAGTAACAGACTGCC 3680497 28 100.0 32 ............................ GCTATGAAAATCACACCGACGCAAACAGAAGC 3680557 28 100.0 32 ............................ TTTGCTTGCAGGATGACGCCATGATGGCCGAC 3680617 28 100.0 32 ............................ CAGCGATACACCAGCGCGTCGCGCATCTTCGT 3680677 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCACCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAACACCGCCCACGCAATGATACGCAGGCTAATAGTTCGCCAGAAACATGTAATGCACTGGAAAGTAACGAGAATTAACCTAGCATAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCCGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTATAAACGGTCTGACGTTCACTGCCGGATAGGCAGCTTAGAAATTGATGCAGGCTTCATTGCCGACTGCGGTTGGTTCACTGCCGGATAGGCAGCTTAGAAAAGCAGGTCAGCCGAGGCGCTGCCATCGCCCTCGTTCACTGCCGGATAGGCAGCTTAGAAATGCGCAGAGAATCCATGCCCGATAGCGTCCGCTGTTCACTGCCGGATAGGCAGCTTAGAAACGGAAACTGGTCTGGAAGTTCGTGTCCGTCCTGTTCACTGCCGGATAGGCAGCTTAGAAAAGCATACTCCCCGGCCAGTTTGGTCTGCTCGGGTTCACTGCCGGATAGGCAGCTTAGAAAATCATAAGTTTGTAAAACGAGTATGGTGGAAAGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 3680827-3681215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001977.1 Dickeya zeae NCPPB 2538 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3680827 28 100.0 31 ............................ TTGATGCAGGCTTCATTGCCGACTGCGGTTG 3680886 28 100.0 32 ............................ AGCAGGTCAGCCGAGGCGCTGCCATCGCCCTC 3680946 28 100.0 33 ............................ TGCGCAGAGAATCCATGCCCGATAGCGTCCGCT 3681007 28 100.0 32 ............................ CGGAAACTGGTCTGGAAGTTCGTGTCCGTCCT 3681067 28 100.0 32 ............................ AGCATACTCCCCGGCCAGTTTGGTCTGCTCGG 3681127 28 100.0 32 ............................ ATCATAAGTTTGTAAAACGAGTATGGTGGAAA 3681187 27 82.1 0 ...........C.C.........-..CG | GC [3681206] ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GATAGGCAGCTTAGAAACATACCTGCTGGACGACCGGACCTGCTTTATCGTTCACTGCCGGATAGGCAGCTTAGAAAAGGTCATCACCGATCAGTACTTCGACGAGATCGTTCACTGCCGGATAGGCAGCTTAGAAACATTACCATGGCGACCGCCAGTAACAGACTGCCGTTCACTGCCGGATAGGCAGCTTAGAAAGCTATGAAAATCACACCGACGCAAACAGAAGCGTTCACTGCCGGATAGGCAGCTTAGAAATTTGCTTGCAGGATGACGCCATGATGGCCGACGTTCACTGCCGGATAGGCAGCTTAGAAACAGCGATACACCAGCGCGTCGCGCATCTTCGTGTTCACTGCCGGATAGGCAGCTTAGAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTATAAACGGTCTGAC # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGAGCGACTTCGCCGGATGCACGGCAGGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTCACTCTACCGATAACCCTCACTATCTAGCGCCCGGAAAAGGGCAACCTATCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCGGCGGCCCGCTTTTCCGGCAGCGCCGGAGATAGCACCGCTGACGGACGGGCTGGTGGTGTTGTGCCGCCGTGGCCCTGCGTCGTCAGGCGAAACGCGCTGACGGCTTCGGCCAGCAGAGAAGCCTGAGACTGCAACGACAGCGCGGCAGAGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //