Array 1 240377-241243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYP010000008.1 Pseudomonas aeruginosa strain PA14-20 NODE_8_length_389090_cov_38.818081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240377 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 240437 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 240497 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 240557 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 240617 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 240677 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 240737 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 240797 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 240857 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 240917 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 240977 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 241038 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 241098 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 241157 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 241216 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 250737-250109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYP010000008.1 Pseudomonas aeruginosa strain PA14-20 NODE_8_length_389090_cov_38.818081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 250736 28 100.0 32 ............................ GCAGTCCAGCCGCCGAACTGGACCCCGCCCGA 250676 28 100.0 32 ............................ ACTGGAAGAACTTCACAATACCGGAGACAAGC 250616 28 100.0 32 ............................ GAGAAGACGCAACAGATCAGGGCGTCGATCCG 250556 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 250496 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 250436 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 250376 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 250316 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 250256 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 250196 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 250136 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 176527-178282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYP010000015.1 Pseudomonas aeruginosa strain PA14-20 NODE_15_length_210085_cov_48.911689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 176527 30 100.0 37 .............................. GTGGCGTCGGCTCGCACGGCCCGGACTACCTGTCAGT 176594 30 100.0 39 .............................. GGATAGAGTAGGTGCGTAGTCAGTTCGCCCCAGGTAAGT 176663 30 100.0 36 .............................. GCTGACCGTTGGCGAGGGCTTCAACTTCGAGGGCGT 176729 30 100.0 35 .............................. CGGTCATGTTGCGGAGCGCGGTGAGCACCTGGAGT 176794 30 100.0 38 .............................. TCCGATACAGGGCATGCAGGGAATGGCCCGCGCCAGGT 176862 30 100.0 36 .............................. TACAACCCGCGGGTGTTGCTCATTGCTGTCATTCGT 176928 30 100.0 37 .............................. AGGCCGTAGCGGTCCTGGTAGCTCTGCATCAGCATGT 176995 30 100.0 38 .............................. ATGGCGAACGAGGGTAAGGCCTTCGGCGACCCGGCAGT 177063 30 100.0 37 .............................. CCCTCGTACTGGGTGCGGAGCCAGGTAAGGATGAAGT 177130 30 100.0 35 .............................. GTGGAACTCGGTTTGCCTTGCAGTGATACCGGCGT 177195 30 100.0 36 .............................. AAAGCGGCCTATGAGTACGCCGCCACCAAGCAGGGT 177261 30 100.0 35 .............................. ATGACGCCCTCGACGAGAGCGATGGAGACCGTTGT 177326 30 100.0 36 .............................. CACCGGCTCCCACTTCACTTTAACGCCTGCGTGTGT 177392 30 100.0 36 .............................. TTGCCGCAAGACAAAATGACGGAATTCTCCCGCCGT 177458 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 177525 30 100.0 36 .............................. TCCATGGAGCGGCAGATGATCGTCGTGCGGTAGGGT 177591 30 100.0 35 .............................. ACAAGGACGCCCAAAGCATTGTCGAGCATTTTAGT 177656 30 100.0 37 .............................. GCCACTGGTAACCAAGTTGAGGTTCAGGCGAACATGT 177723 30 100.0 36 .............................. CACTACGCCGAGATGGTCCGGCGGTGGGCAAACAGT 177789 30 100.0 36 .............................. TGCACCGAGTTACCGGCCTGCGCGTTCCACGCCAGT 177855 30 100.0 36 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGGT 177921 30 100.0 37 .............................. GCCACCTGCACCCGCCAGCCCAGCCTGGGCGGCATGT 177988 30 100.0 36 .............................. AACGCGGGCGCGTGGGCGACGGTGGTCATGTGGCGT 178054 30 96.7 36 ..........T................... AACCGTTCCACGGCTGGGGTGCGCCTGGAAATGCGT 178120 30 100.0 36 .............................. CAAAGCTGGACCCTGGCGCGGATCTGCATGTCTCGT 178186 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 178253 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 99.3 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGTGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGATAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGTGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //