Array 1 126093-125080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXJ010000003.1 Clostridioides difficile strain HU39 NODE_3_length_241998_cov_29.3143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 126092 29 100.0 38 ............................. TTACTCCATAACTATTTTGTAACTCAACGTCTTTCAAA 126025 29 100.0 37 ............................. TAAGTTTTTCATTTTTTTCAAATCTGACAACATCAGA 125959 29 100.0 36 ............................. AAAATTTACTTCTAAAATGTATCTTTGGACTGAAAG 125894 29 100.0 37 ............................. TATTTAGAAGATGATTTGTTTCAAGAGGGTGCGATAG 125828 29 100.0 37 ............................. ACAATACCCCCCTATTGCAATGCTTCATCAGCTGATA 125762 29 100.0 36 ............................. GGTAGTACCTACATTATTTATTTTTACAGAAACAGA 125697 29 100.0 36 ............................. GCGGAAATAGAAAAGATGTACCCCGATTATGAGTTA 125632 29 100.0 37 ............................. GCGTTTTTATATGCATCTGAATAACTATTCAATAAAG 125566 29 100.0 37 ............................. GTTTGTTCATACAAGCCTATCGCTCGATTTCTTCTAT 125500 29 100.0 38 ............................. GGCTTAAATGTCACCTTTACAGTCAAAGACCTTGTTGC 125433 29 100.0 37 ............................. AAGATACTTGCTATTTCTAATGCTTCACTGTATTTTA 125367 29 100.0 36 ............................. TGCACCTATTACAGCTTTTCTGAACGCTTCATTCTT 125302 29 100.0 36 ............................. AAGAAATAACTTATATTAAAGACAACTTTGACGTGG 125237 29 100.0 33 ............................. GTACAGGCTTTAGAAATTGGTATTAGATATAAT 125175 29 100.0 37 ............................. TTTAATTCGTCATCGCTAAAAGAGTCAACTTTGGCTA 125109 29 82.8 0 ...........G.......C.C..A...A | A [125088] ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.9 37 GTTTTATAATGACTATGTAGTGTGTAAAC # Left flank : TTATACTTCTCAAACATGTTCAGAATGTGGTCATGTAGACAAAGAAAACAGGGAGACACAGGCTAAATTTAAATGTTTGGAATGTGGATTTGAAGCTAATGCAGATTATAATGCTGCTAGAAATATAGGAAAAAGTGATAAATTTGTAAAATAAAATACAAGAATATATGTACGGGTGATTTAGTGTAGATGGTAACATCTCCAAGAGAAATCTTGCATCCGAAGGGTGAGGGTATAGATAAAACGCATAAGGTAGTATGCCAAATATGTGCTATAACCACTCACTAAGCCGAAAAAACCTTAGTTTATGATGGCAACTAAGCACACTATTATATATAAAATGCAGTGAGCGAACTTTTACATTTACATATTCTAAGCAGTTGAAATTACTATGGTGTAGCGATTATTTTTAAAACATCAAAAAACACTACTGGTCGCTCAATGCAATATTTTGTAAATTACATAGATTAAAGTATTGCAATTGCTGTATTTCATTTAGG # Right flank : ATCTTATAGTAATTAAAAATAAATGCTTATAAATAACACTTACTTAAATAGTATGTGTTTTTTTATACAAAAAATGAAAGAAGGTGAATATATGGTAAGAAAACTGCGGTGTAGTATTTAAAAACATTTTAGAAAGGAAGTGATAACTTGTTAATAGACATATACTTAAAAAATGAAAAAGAAAAAATAGATTTCCATTTTCCTGTTAATCCACAAGATTCTTTATCTATAAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTAAATCTAGGTGAATTTGACATTAAAAAAGAAGGGGAGAAGATAAGAGAAATATCATTCAAGACTTTCTTACCCAATTTATATGATGCTTCTTATTGTAGATACAGTGAGTTAAAAAATCCAATTGAAATAGTTGCAATGCTTGAAAAATGGGTAGACCAAACCGAACCTCTAAGACTTATAATGACTGGTTTTGGTTACAATGGATTAGTTACAATATCTAGTTTTAGCAATAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAATGACTATGTAGTGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 55737-56287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXJ010000006.1 Clostridioides difficile strain HU39 NODE_6_length_199789_cov_28.246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55737 29 100.0 36 ............................. TTAAAAGTCCAACCAGTTTGATTAGTACCAGGGATA 55802 29 100.0 37 ............................. GTATCAATTAGTATTTTTTTTGATTTTTTCACTTTAC 55868 29 100.0 36 ............................. ACGATTGATTTAATTACTATCAATTCACTTATAGCG 55933 29 100.0 36 ............................. GGTAAGGACATTTTTTTATAAACTCTCTAATACTTT 55998 29 100.0 36 ............................. CAACGATTTTGTTAAATAGCTCTATATATAAACTTG 56063 29 96.6 38 ...............C............. ACAAGTGAATGGTCAATAGATATAATAAATTTTTTAGA 56130 29 100.0 36 ............................. TGGATTTAGATTATATGTTTGAACTTAATTTAAGAG 56195 29 96.6 36 .................C........... TTTTGTGATGATAGAAGTGGACATATGTACTTGACT 56260 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.1 36 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TCTAATTCATTTTTTAATATTCCTTGTAATTTTAATTTGCTTTGTTTTAGCTTTTTTCTTTTAATAAACTTATTAATTCATCAAGTGCTGATAATGTTTTCTTTGATTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTAAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATCTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACACTTGCTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAATATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCACAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATCAAAGGAACTGAATTTATGGTAAGAAAACTGCGATGTAGTATTCAAAAATATTTTAGAAAGGAAGTGATAATTTGAGAATAGACATATACCTAAAAAGTGAAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGAGAAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 67727-68675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXJ010000008.1 Clostridioides difficile strain HU39 NODE_8_length_176445_cov_40.4425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 67727 29 100.0 38 ............................. ACTATCTAGCCATAGTAAGTAACAGTAATCTTTTACTA 67794 29 100.0 37 ............................. TGGTATTTTTTGTTTCATCGAATTTATTTCCAATATC 67860 29 100.0 37 ............................. ATTAACAATAAAATAATTTTCAAACAATAAAATTACC 67926 29 100.0 36 ............................. ACGAAAATAAAAGAGCTTACTAAAAATGCTATTATG 67991 29 100.0 36 ............................. CGGCAAACTAAAAGGAAATTTAGTATTAATATTAGT 68056 29 100.0 36 ............................. CTACCCCTCTTAACGAAATTAGATTATAACTTGATG 68121 29 100.0 38 ............................. AGTCTTGGCTATGACAAGTTTAGCGAAACAGATAAAAA 68188 29 100.0 37 ............................. ATATATATATAAAATTTAGTAATATCAGCAAAAGCAG 68254 29 100.0 37 ............................. TTATATTTGAATCTAAACTAGTTGTATCTATTAAAAA 68320 29 100.0 36 ............................. TTTAGAAACACGCGTATAATAGTATTACCTAGTATA 68385 29 100.0 37 ............................. GAAGATAAATTTTTCTTCATACTTCTTCTTAGTAATC 68451 29 100.0 36 ............................. ACTGAAAGTACCTTTAATACATATGATGATTTTGAA 68516 29 100.0 37 ............................. TAAAATTTGTTAAACCAAAAAACATCAATTTGATTAA 68582 29 100.0 36 ............................. TTCAGCTTCTCATGAGTGTAATCATATCCAAATAAC 68647 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.9 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAACACTTAAAAAATATCTAACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGCGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAAGGCTTAACAGTTGGAATATAAGAGATTGAAGGGTACTGATAATTGTTATTAATTGCACTATTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATGATTGCGTGAGTGTAGCATTTTCAGGCTATTCAATTGCATCTATTCTGGG # Right flank : TGAAGTAAACTTATACTATAAATAAAAATCAACATAAAAATGGGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAACAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAATAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAATGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTCATAGGAGCCTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAGGCAGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAGGATTTAAAGAGTACATCATGGAATATAGTAAATAACATTAATATATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 45064-46271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXJ010000014.1 Clostridioides difficile strain HU39 NODE_14_length_122603_cov_37.5878, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 45064 29 100.0 36 ............................. GATGTTGATTGTCCTAATTCTAATGCACTTTGTTTT 45129 29 100.0 37 ............................. AAATATACTAACAATAATTTTTATTTTTTTCTTTTAA 45195 29 100.0 36 ............................. GTTTCAACATCAATATTTTTAACACTATCACTCTTA 45260 29 100.0 37 ............................. CCAGGTAAAAATGGAGGGATAAAAGTGGAAAATGTTA 45326 29 100.0 37 ............................. ACGATATTGCTTATACTAAAACTTTTTACTAAAAGAA 45392 29 100.0 37 ............................. ACGGTTTGCACTTGGTCAAACGTCCTCCCACTATAAA 45458 29 100.0 36 ............................. TCAAAAGAGGCTTAGCCTCGTGGTCGAGGAATACTA 45523 29 100.0 36 ............................. ACTTCAAGTTGTAAAAATTCGCTATCTAAGTCAATC 45588 29 100.0 36 ............................. ATCTATACAATTTACACATTCCATTTTTTATGCCCC 45653 29 100.0 36 ............................. TGAGTTTTCTATATTCAGCATTATTAGTAAAATTAT 45718 29 100.0 36 ............................. TCGCCTACATATTCTCCTTCAAAAATATTTATATCA 45783 29 100.0 36 ............................. ATTGTCCAAGAACTACTATCAACACTATAAAACTTA 45848 29 100.0 37 ............................. GAAGATGTTAGAAATTTTGTAAATAGCCTAATAAAAA 45914 29 100.0 37 ............................. GTGTATGTTAATTCTTGATTATTCGAGTCTGTACCTG 45980 29 100.0 37 ............................. TTCGAATTTCTTCTAAACATGCTAGAATCTGCATCAA 46046 29 93.1 37 .............C..T............ ACGCCAAACAGCTTATCAATGTAGTTATATGCAACAA 46112 29 100.0 36 ............................. TCGTCTACCCATTCTCCACCACCTTCTCCATCACTA 46177 29 100.0 37 ............................. GTTATTGCCCAACTTGGATTATTACCTTTATAGTTTA 46243 29 89.7 0 ..........T............GC.... | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.1 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATACAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATGATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTACATAAGTGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TAAATCAGATATATCAGAAAGTATATATAAAATTATGTATAAACTATATTGTTATGAGTACAGGTAATATTTACCCATTTATTAAAAAACTTAGCTAAGAATTTGATTTATATTATTGAATTAGCAAGAATTTTGGAAAATAGAAATATATACCCCAACGATACCCCAATTACAAAAATAAACAATAAAAACAACCAAAAAAATTGCTCCAACATCATAACTAAATAGCTATATACCTACACTTGAAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCTAAGAAAAATATTAGCACTTTGCTAATATTTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACACAAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATAACCGCAAAACAAATATCTGAAAAACTAGAAATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //