Array 1 682-914 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDT01000013.1 Helicobacter cinaedi strain JCHOHcS10 isolate S10 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 682 36 100.0 30 .................................... CAGCATTCACACCGCCCACGAACACATCTT 748 36 100.0 30 .................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGCA 814 36 100.0 30 .................................... TACACGCTCACAGCCCATAAGCTAGATTCA 880 34 86.1 0 ...................--.A.........T.T. | T [909] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 42234-42401 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDT01000016.1 Helicobacter cinaedi strain JCHOHcS10 isolate S10 scaffold16, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 42234 35 100.0 32 ................................... TGGTATAATATAAAGGGTGTAGCGAAATACTG 42301 35 100.0 31 ................................... ATGACAAGTCTATACCCGTTTTTATACTCGG 42367 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 3 35 100.0 32 TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Left flank : GCGAAAACAATAAAAGTTTTTTATCCATACTCATAGAAGAAGGACTCAAAGATTCTAGCTCTCTCCTAAAATCACTAGATAAAATATCATTAACTTTTAGCAGTGTATTGCCCAACAAATTGCACTTATCTTCAAATGTTTTATTCTTAATCTCGCTCATTGTTAGCCCCTTTTTGTTTTTGAGATTCAATCAATCCTTTGCCTTTTTCAAGTCCTTTGTTTGTCAGCTCACTTGTTTTTTCTTTAACCTTATCTAGCATTCTGCTTTTTTTCAATGGCTTCTTTTGCTTCAATGCCCTTTTCTTTCAATTTAGAAAACGCAGAGCCAAATGAAAAGCCATTTGTTGTTTGCTTTTGATTTTCATCAGCATAACTTTTAAAGTCATTTAGGGCATTAAAATTCTGCTTTGACTCAACCACACTCTGTGAAGTGTTACTATCGCCATCTTGTGTCTCTAGCTCTGCCATTATTCGTATCCAATTGGCTTCAATCTCACTAA # Right flank : TATAATTGTAGTTTGCTAGTAGAAAATTATAGTTTTAGTCCCTTCTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGGAAAGATTTACCTCTATGGAAAATCGTAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTATCACACAAGAGGAAGCATTACAAGAACTGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTAAAAATCCTCCTATTATTCCTAAAGTTAGGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTTTATGATTTTGTATTCCACATAGCAGCAGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATTTCCATTCAATCTCACTTGCATATTACTAAGTTTTAGTCCCTTCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 42921-42620 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDT01000016.1 Helicobacter cinaedi strain JCHOHcS10 isolate S10 scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42920 36 100.0 30 .................................... TTAGTAATATGCAAGTGAGATTGAATGGAA 42854 36 100.0 30 .................................... TGCTGCTATGTGGAATACAAAATCATAAAA 42788 36 100.0 30 .................................... CTAACTTTAGGAATAATAGGAGGATTTTTA 42722 36 100.0 31 .................................... AGTTCTTGTAATGCTTCCTCTTGTGTGATAA 42655 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TACGATTTTCCATAGAGGTAAATCTTTCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGAAGGGACTAAAACTATAATTTTCTACTAGCAAACTACAATTATATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACCGAGTATAAAAACGGGTATAGACTTGTCATATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAACAGTATTTCGCTACACCCTTTATATTATACCAATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAATTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //