Array 1 31407-32755 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMA01000041.1 Methanobrevibacter smithii TS95D Contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31407 37 100.0 35 ..................................... ATCAGGTAATTTAAAGCCTATGGAGTCTGCATATT 31479 37 100.0 35 ..................................... TTGTTTCAGCTGTTTTATAATATTTGTGTCTGTGT 31551 37 100.0 37 ..................................... CATCTCCACGATGTAGTTTTTGTTGGTTACTTTCAAT 31625 37 100.0 34 ..................................... ACTACATCTCCACGATGTAGTTTTTGTTGGTTAC 31696 37 100.0 35 ..................................... TTCCTAACGAATGGCAATCCGTATGTAACTTCGTT 31768 37 100.0 35 ..................................... TTTCTAAGCATTTTTAGAAATGCTTGTTTTTTTGA 31840 37 100.0 38 ..................................... TTGTTCTTCGTATTGACTTATGATTTCAGCTATTTCAT 31915 37 100.0 35 ..................................... GTCCTTGAAACTTTTTCAACATTTTTATAAATCTT 31987 37 100.0 36 ..................................... GATTTATCCCATGTATGATTATTGGTGCTTATTACA 32060 37 100.0 36 ..................................... TTCGTTTTGATTGAATTTTTCATTAATCATTTATAA 32133 37 100.0 37 ..................................... CTTTTAAATTCATAATTAACACCTTAACGGGCTACAA 32207 37 100.0 36 ..................................... TAATTTTATCTTCTTTATTGATTTTCTCTTGTCTGT 32280 37 100.0 35 ..................................... CAATTTGCTAAAACACTATCAGTGTGTTTAAACGT 32352 37 100.0 37 ..................................... TTTTGGCTATTTTAAAGCCTAATTTTATTGCATTTTC 32426 37 100.0 34 ..................................... TTTTTCTAAAACAATTTCTTTATTATTGTTAATG 32497 37 100.0 38 ..................................... TATCTATTAATCTATTAGATAGACCGGCTTTATTACAA 32572 37 100.0 36 ..................................... ACATTTCCTCCATGCGATTGCTTAATTCTTCTCTTT 32645 37 100.0 37 ..................................... TTTGTAAAAATTCTTCTTTTAACATTTTACTGCCTCT 32719 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 100.0 36 ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Left flank : ATGAAGGTCAAATCAGGATTCAGGATAAAGCTCGAAAATTATTAATAGCTAAAATAATGGATAAATTAAACTCTAAAATTAACTTTAATGATAAAAAAATGAGTTATGAAGATATAATTCTTTATCAGGGCAGATTACTTGGTAAATATTTAACAGGAGAAGAGAAAAATTATGTTGGATTTTCAAGAAGATGGTGAAGATTGCCTAATTTTTCTTAAAATAATATTTTTTTATAAATAATTAATACTTTTTATTTTTCAGATAAATCAGTATTTCAGCTAGTTTTCTTTAGATTACTTTTATCATGTGGTTTGGATGATGATGATCTTATATTATATTCATTATTGCTTTAATTTTAGCTAGTTTTAATAGAAAAGTATTTAAATAATTTGTGCAATAATTTATATACAGAGGTTGGGTGAAGTAAAGTTCACAGAAATTGTCACTAAATACAAGTTTTTTGCATAAAAAAAGTGAAATTTTAAGAAATTTTCGCGGCT # Right flank : TATTCAGTATCTGGAATTTCTTCGTCCAAATACTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 36-3110 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMA01000042.1 Methanobrevibacter smithii TS95D Contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 100.0 34 ..................................... TATAAATTCGTTCTTTTCCATATCTAACACCTCT 107 37 100.0 36 ..................................... TTGCAGATTTTGCTTCTTCCTTGGTCGCAACACTAA 180 37 100.0 36 ..................................... GCTACAGCTTTATCTTTTCCTCTTTTTCCTTTTGTT 253 37 100.0 35 ..................................... AGTGCATGAAGTTAGCTTATCTGATTTGGGTTTTG 325 37 100.0 34 ..................................... CTTCGATATCAAAACCATAATTGTCTAATATTTC 396 37 100.0 36 ..................................... TCCCTTACGGATATTATTTAGTTCCTTTCTTTCTTT 469 37 100.0 36 ..................................... ATTTGTGGGCTGTTATATCCCCTGCAATCTATATAG 542 37 100.0 36 ..................................... TCCAAGAGCTTTATTTGTCCTACTGAATGTGTTAAC 615 37 100.0 34 ..................................... AATTTTAAAATTTAAATCCATTTTATCACCTTAA 686 37 100.0 35 ..................................... TAGGTTCTTCGTCTAGATACTTTTTGCTTAAATAA 758 37 100.0 36 ..................................... AAGTCTATCTGTTTTTTATAGACTTTTTTTCTAGTA 831 37 100.0 35 ..................................... CGATATCTATTACTCTGGTGATGGAGTAGTGGGTT 903 37 100.0 38 ..................................... TTTTATTGATTTGAAATTTTGAAACATTTTTTCACCAT 978 37 100.0 34 ..................................... AGATATCTTGTGTTAAGTCTGGGCCTACTTCGTA 1049 37 100.0 38 ..................................... GTATCATATGCTATTATAGCATCTGATCTGCTTTTTCT 1124 37 100.0 34 ..................................... ATATTGTCACGAACTTTGATGCTTTTGTATTTTT 1195 37 100.0 35 ..................................... TACATACTTGGTCATTCTTATGGATTTAAAATCTT 1267 37 100.0 35 ..................................... CGGCGTCGCTTATTTCGTTATCTAAGTATTTTTTG 1339 37 100.0 36 ..................................... TGTTTAAAAACTATAATTTTGAACATTGTAGGACCT 1412 37 100.0 35 ..................................... TTGTCAAATGACTCATTTATTTTTCTTTTGAGTCT 1484 37 100.0 34 ..................................... GAGGTTTTTAAACCTTTCCGTTCTTTATTTTTGT 1555 37 100.0 36 ..................................... TTTGCACCCTACAATGTCCTTGAATACACTCTGGGC 1628 37 100.0 36 ..................................... ACTTTTAATAGCTATTTAAAAGCTCAATAATCCGTA 1701 37 100.0 35 ..................................... AAAACTGATTTCGATAACTCCTAATCCTTCTATGT 1773 37 100.0 35 ..................................... AAAAAAGTGGATTCGGGATCCTACAAGCACACTTT 1845 37 100.0 35 ..................................... TCATCTGTTTTTAACAGATGATACTTATTTATTAT 1917 37 100.0 34 ..................................... CTGTGGAAGTTGAGCCTTTTTGCGACCCAGAGTT 1988 37 100.0 35 ..................................... TTGACAGTTTATATCAGTTAAAGGCATACTACACT 2060 37 100.0 33 ..................................... ATAAGTATTAATATTATCCCTTTTAACGGTATT 2130 37 100.0 35 ..................................... GTAATTCGTACATTTTATTCACCTATTAATTTTTG 2202 37 100.0 35 ..................................... CATCGAAGTCTAATTCTTCGAGAGTGTCGAGATAG 2274 37 100.0 36 ..................................... TTATCGTGTTTTAAATTAAAGTCCTCAAGTTGTCCG 2347 37 100.0 35 ..................................... TTAAAATCAACAATTCTTAAAAAAACCACTTCTAA 2419 37 100.0 36 ..................................... TTGTAATACATTTAATAATGTTTTCTTCGTCTATAA 2492 37 100.0 35 ..................................... TTAATTAATTCGTTATAAGCTTGTCCACTTGATTT 2564 37 100.0 37 ..................................... TTGCCCTTCAAATTCTATAAAGTTCGCATTTGCTAAT 2638 37 100.0 36 ..................................... AATATCTATTACATCAGTACTAATAAATTGTTTTAT 2711 37 100.0 36 ..................................... GCTTGTTGCCGTTTTTGTTGCCGTTTTTGTTTCTGA 2784 37 94.6 37 ..........T.......T.................. GCATTAAATGTTGCAAATAACTCTGGCATTTGCTTAT 2858 37 100.0 35 ..................................... TGCAGATTTTACTCTGCTTAATTTGTTGCTCATAT 2930 37 100.0 34 ..................................... TATTCTACCATTCTTGGTATTTGTTTTCGTTGTA 3001 37 94.6 36 ..........T.......T.................. TATTGGACTCTTATATCTGTGCCTGGTAGAGTACGT 3074 37 94.6 0 ..........T.......T.................. | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 99.6 35 ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Left flank : GGCAGTACATCAGTATCAAGCCATTTTTTAGCTATA # Right flank : CATATCATTATATGTAGTAATAAATTCTCTAAATGGTATTTCAAAAAAAACTATCTACTAAAACAAGGCTTAAATGAGTTTTTATCATAATCAACTATTTCCAGTTGATTTTTATAAAGTGAATTCTAAAAAGATTATTAACAAATTGTTGCAGTGTTATATATGAATGTTGAAAGTTTGCAAATCATTTCTAAATTTATGAATGATTATGAATATGAAAAAGCTATGGAATTATGTGATGAGCTTTTAAAAAAAGATAATGAAAACAGCCATCTTTGGGCTTTAAAAGGATGCTGTTTAAATCATTTTGAAAAATATGTTGAAGCAATGGAGTGTTACAACAGATCCCTAAGCGTGGATGATGAAAACCCTTTTATCTGGTTTCATGTGGGTAAAATTTTAATGGAATATGATTTATTTGATGATGCTATGGAGTGCTTTAACAATTCATTGGAAATTAATCCTGCTGATGATATGGCACTGTATTCAAAAGGGGAGTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAAAACCATCTACTAAAATAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 107431-106601 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMA01000004.1 Methanobrevibacter smithii TS95D Contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 107430 31 100.0 38 ............................... AGGATTATGGGTTGGATTGATACTAACACTAATTTTAA 107361 31 100.0 38 ............................... TGTTCCTTATTATTTGATTAAATACCATTTTTAACACT 107292 31 100.0 33 ............................... CATTATATGCAATGAGTGGAGGATTTTATGCTG 107228 31 100.0 35 ............................... GTAGGAAACCACGTACGTGCACGTACGTACGTACG 107162 31 100.0 35 ............................... AACATAAACTACAAACATTACTATCTTCAGCAGTT 107096 31 100.0 34 ............................... CAATACTTGTAGTGTGACTCATATGCTTCACACA 107031 31 100.0 34 ............................... TCAACCCCCTGAAATTTTTTCATTTCAGAAGGAG 106966 31 100.0 36 ............................... TTGTATTCGTTTAGCACTCCATCGAAATCCACACAT 106899 31 100.0 37 ............................... CATCTTGCTTATCAGGAAGTAAGGTTCACCACAACAG 106831 31 100.0 35 ............................... AAGGATAATCCTGATACTCTGAAAGGATTTGCTTT 106765 31 100.0 36 ............................... TTCAAAACTCTTGGGACAACTTCTCTGCAGAGTATA 106698 31 100.0 36 ............................... GTACTTCACCGGACTCCATGCCTTCAGACCATTCCA 106631 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 13 31 100.0 36 GTTAGAAATAAGACTATAATAGGATTGAAAT # Left flank : GGATTGAAATAGCAATAGACAATGGAGAATTTGATAATAAATT # Right flank : TCATTTTGCACCTATTGATATATAAATTTAATGATGGTTAGAAATAAGGCACTGTCAATAACTTTGGTGATGAATGCCTCGGAAGTTTCTCTGCACCCAGTATTTGGTTTTGAGAGAAAATCTTGTCCTAGCTCCTTCAAAAGTTCTTAATGTTTTTTTAATATGCTTAGGGAAAACTTTTTGAAAGAAATTTTCAATTTTATTACTTGTAGTTGGAACATTACTATTTTCAAGATGAAATGTTATTGTTTTAAAGTAAGGAATGATGAAAAACCACAATAAATTAAAAATAACTTTCGGCAAATTGTTTTGTATACTAATAAGATAATCTCTACCTTTTTTAGCAGATTCTAAATCATTAGCATCTAAAACATCAAAAACTAATTGTTTACAATAATTTAAGTATTCCAATTCTTCATCAGAATAATTATTTCTTTTCTTATTCTCCCTAATGTTCCTGTTTATCTTTTGTTTTGTGTGAAACATACAGAATTGATGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATAAGACTATAATAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //