Array 1 3454-1961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYI010000019.1 Salmonella enterica strain S15BD05371 19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3453 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3392 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3331 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3270 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3209 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3148 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3087 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3026 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2965 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2904 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2843 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2782 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2721 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2660 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2599 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2538 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2476 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2415 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2354 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2293 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2232 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2171 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2110 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2049 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1988 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8276-10179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYI010000057.1 Salmonella enterica strain S15BD05371 57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8276 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8337 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8398 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8459 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 8520 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 8581 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 8642 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 8704 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 8765 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 8826 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 8887 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 8948 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9009 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9070 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9131 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9192 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9253 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9314 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9375 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9436 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9498 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9601 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9662 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9723 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9784 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 9845 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 9906 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9967 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10028 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10089 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10150 29 96.6 0 A............................ | A [10176] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //