Array 1 31994-30090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKZ01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31993 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 31932 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31871 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31810 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31749 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31688 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31627 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31565 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31504 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31443 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31382 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31321 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31260 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31199 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31138 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31077 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31016 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30955 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30894 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30833 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30771 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30668 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30607 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30546 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30485 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30424 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30363 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30302 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30241 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30180 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30119 29 96.6 0 A............................ | A [30092] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5297-6789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKZ01000172.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5297 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5358 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5419 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5480 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5541 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5602 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5663 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5724 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5785 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5846 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5907 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5968 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6029 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6090 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6151 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6212 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6274 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6335 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6396 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6457 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6518 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6579 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6640 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6701 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6762 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //