Array 1 514382-515075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018793.1 Campylobacter sp. RM12175 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 514382 36 100.0 29 .................................... TAATATTTAGACATATTCAAATTACCATA 514447 36 100.0 29 .................................... TATATCTAATTCATCTATGTTTATCCCTA 514512 36 100.0 31 .................................... TTTATCAATCTTTACATCTTGTAGTAGCTGT 514579 36 100.0 31 .................................... AGTTAAACCGCACGATAAAAAGCGCAGCACT 514646 36 100.0 29 .................................... AAAGGAGTAGTATATGCAATCAAAATATT 514711 36 100.0 31 .................................... CCAAAAAAGCAAAAATGAAACTAAATAAAGG 514778 36 100.0 29 .................................... CGCAAACGGGCAATTAACAAATAAAAATA 514843 36 100.0 30 .................................... TGAAAATGTATATACATTTGCTGGTCTTGA 514909 36 100.0 30 .................................... TTGGGACACTTGAAATACCATCAAGACCCT 514975 36 100.0 31 .................................... CTGCATATTCACCATATTTTACTTTTTCTAT 515042 34 80.6 0 .....................--..T..T....GAT | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.2 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTGCGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTAAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAAATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TTAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAATGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGAGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGCGACTGACTAAAAATGGCTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTGCCTGCAAATTATGAAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1237461-1237854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018793.1 Campylobacter sp. RM12175 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1237461 24 95.8 51 ...................A.... ACACATTTAACACTGGTCAAGTCACATTTAATAATAAATTTCAATCCCCTA 1237536 24 100.0 51 ........................ TCAACCAACCACTTAATAGCTGGAATGTTTCTAATGTATTTCAATCCCCTA 1237611 24 100.0 50 ........................ TCAACCAACCACTTAATAGCTGGAATGTTTCTAATGTATTTCAATCCCCT 1237685 24 100.0 47 ........................ TTGGCGATAGACCATCTGGGCATACTATGATTATGTTTCAATCCCCT 1237756 24 100.0 51 ........................ TTTATATAATGAATTGCGTAAGTATGCACGGCACTTTCGTTTCAATCCCCT 1237831 24 95.8 0 ..............C......... | ========== ====== ====== ====== ======================== =================================================== ================== 6 24 98.6 50 AAATCGGGTCATATTGTTTGTAAT # Left flank : TGAAGTGCATTATGTAGATGCCGGGTATAATATCATGGGTATGGGTGATGTTTTAAGTGATGCTTTTGGCAATACAGTCTTAGCCTGGGATGCTAAATAACCATAGAGCCAAATAAGGCTCTAATACTCATCATATTGATAAACTAATATAACTTCTTAGAACAATTTTAATCTTTTAAATTGGCTTATATTATTTGCGAGATAGCACTAAGGATAAATAGCAATTAGATTACTATTTTTGAGTAATCATATGCTTTTTTATCTTATCTTGCTTGGCTCTTTTTAACTCTTTTTGGTATAAATAGCAAAAAAGATAATAAAAAAAGTAATAAAAAACCATCAAGCATATAGCTATATATTGTGCTAACTCTATATCTATCATAAAAATTTTATTTAAAATAGCTATTAGTAACAATAAAAAATAGTAATTTGAATATAAATATCATAATTTACTCCTTTGTTTAATATCGCATAGTGATTAATATGAGTTTGAATCCCCT # Right flank : TAGACGCAAATTCATCATTTGAGTCTATATAGCCAATTATACAAATCAATAAATAGCCATAAAACCACACTTTGAAATTTCACACAATCAAAATATAGAATAAAAAGTTAAAAAACATTGAATCTACCATATAAATCAAGATAAGCAAATTCAAATTAAAGCAATATTTTATATATAAATAACCAAATTTTGGCTGAAAATTTCTACAAATTCACATAAATTTAGATCTTTTTTTTAAAAGTGGAAAAATATTTATGATAACTCTAGGTAAATTTAATTGCTATATTTACAAAAGAGCTTATATAATATACCAACAAAATAGCTTGTGATGGCTTTAAACTTTTAAAATCAGCTGCTTATAGCTATTTTGATGGTTTTTAATATTTGATTTAGCATTTGCAATAGAGTCGCCTGAGTTGGCGTGGGCTAGGTTGTTTCTTAATTTATCTAATCTTTTATATAGTTGATTTATCTTATCTATTTGTATGATGTTGTGATAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.27, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCGGGTCATATTGTTTGTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1251503-1252274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018793.1 Campylobacter sp. RM12175 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1251503 37 100.0 35 ..................................... AAGAATGTCCTTTATCGACTTTAATTTCGCATGGT 1251575 37 100.0 34 ..................................... ATTATCATAGGTGCTGTTTTAATTGCATCTGCTT 1251646 37 100.0 36 ..................................... ACATTTGTGATTTGCTCATTTACACTTGTAGCTAAT 1251719 37 100.0 39 ..................................... ATAGTAGAAAAATACCACTCTTCAAGCTCTTTAAAATCA 1251795 37 100.0 35 ..................................... TCCATATATACAGTATCATCTTGTCCTAAAATACC 1251867 37 100.0 36 ..................................... GCCTAAATTCTCTTTTTTATACTCGCTAATTGCCTC 1251940 37 100.0 37 ..................................... CTAACGGATAAAGGAGTTGCGGTAGTTCCATCTTTTG 1252014 37 100.0 36 ..................................... TAGTTTGAGCCTTTATGCTTTAGCTCTGTAATTCTA 1252087 37 100.0 38 ..................................... AAAAGAGCCAAGTTGGGATAATTTAACAAAAGTCTTTA 1252162 37 100.0 39 ..................................... ATGGATTTAGTTAAACCAGCCATAACTGCATAATGAGCG 1252238 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGTAAACATTTTAATAAGCCATTTTTTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGTTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTTGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAACGCCCATAAAATAGGCTAAATTTGGCTCA # Right flank : ACAAATCTAAACATCTAATCAAATTTAAATATTATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTACTAAGAAATCGAATAATACTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGGAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCACTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //