Array 1 62901-61221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUU010000002.1 Campylobacter concisus isolate 2010-36743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 62900 30 100.0 34 .............................. CCATCTGAAAGGAGTTTATAAGGGGTATAGAAAG 62836 30 100.0 36 .............................. ATCCGCTTGTGTTACCTTTGTTCTGCCTTGTTTTGG 62770 30 100.0 38 .............................. TTTAAGCTTAATTCAAACAAATGCAGATAGCGAGAAAA 62702 30 100.0 37 .............................. TCTTTTACGCTTATCTTTTTATCATTAAGCGGTTCTT 62635 30 100.0 35 .............................. CCTGCACCTATACGCATTTCGGATTTTGGGAGAAA 62570 30 96.7 35 .......C...................... GCTAGTATTTTCAATGAAAGGTTTAATTGTTATGC 62505 30 100.0 35 .............................. TTTTACTACGGCAACAACAATATGCCAACGAAAGA 62440 30 100.0 34 .............................. GTAAAATCTATTTCATTATCTACCATTGTTTTTC 62376 30 100.0 35 .............................. GCAAGGGGTGTTTAAACCAAAGCCAACCTACGGAG 62311 30 100.0 34 .............................. AACAATTTCCTTACCTTTTTTCGCAATTGTATCA 62247 30 100.0 37 .............................. AGCCTACAAAAGCTTTGCTACTAGGCTCTGCTGTGCA 62180 30 100.0 36 .............................. TAATGTTTTGCTCGGTCGCCTCTACTTGAAATGGAT 62114 30 100.0 37 .............................. GATAGTGAGTTGGCTGATTTTTTAGAAACTAGCAAAT 62047 30 100.0 39 .............................. CTCTTGACAAAGCTCTACATCAAAAGGCGAAACACCGTA 61978 30 100.0 38 .............................. TCTTTGATTTTATGGAAGTATCATACAAGATTTTAAGA 61910 30 100.0 37 .............................. TCAGTTTTAGCAGATGAAACAACTTCACTATTTTTAG 61843 30 100.0 37 .............................. CAAACCACGCATGCCGAATTTATTATTCTCCAAAACT 61776 30 96.7 38 ....T......................... ACTAAGCTGTTTTTTGAGTTTGTCGTTTGGCACAATGC 61708 30 96.7 36 .......G...................... AGCGTTATGGGATATTTACCAAGACAGCGTAAGAAA 61642 30 100.0 33 .............................. CGAAAACTATATACGCCACGCTCTCATAATCGG 61579 30 100.0 37 .............................. TGCATGCGAACACTAAGCAAAAGCACCTACCTAAAAC 61512 30 100.0 35 .............................. TTTGTAGGGGATATCCCCTACACCCCTTAAAACAT 61447 30 100.0 35 .............................. TCTGCCTCTGGAATACCAGTTGTTGACGGAGCTCA 61382 30 100.0 35 .............................. ACAGTGCAAGAAATTCCACCTTTGATTGTTGAAAC 61317 30 100.0 37 .............................. ATGGCGATATTGGCGTAGAACAAACCGACAAAGAAGT 61250 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.6 36 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : TGATATTAAAAAAGCAAAAGAGATTTTAAAGGATTATAGATGAAAGAAGAATTTACAAAATTTAATTTAGAAGACTATTTAACAACTGATGAATTAAGAAAAGAGTATTTAAATCAAGTTTTAGCCGATGGCGATATTGAAGAATTTAAAAGAGCATTATTTTATATAGCAAAGTCAAAAGGCATTGAAAACGTTGCAAAGAAAGCAAATTTAAATAGAGAAAGCTTTTATAAGATGTTTAAAGAGAATTCAAAGCCTAGATTTGAAAGTATATTTAAGGTTGTGAATGCTCTTGATATTAAGCTTGTTTATGCTTAGTCTATTTCATTATTATTTCTAGCTTCTTTTTTGCTGTATTGGCTGGGGTTTTGGCTTTTTGAAGTATCTATATAAAACAATATTATCGTTCGTTTGATAGATCTTTGCAAGATAGCAACTATATTATTTAAATCTCTTCTTTGAAAATCTTTGGCTTTTAAATTTGTCACTTTATGTCGTGT # Right flank : AGCACCAAAAAGCTGATTTTATAGGCATTCTAGTGCAAGAAGTCTATATTTTTTCGCCTTAAATTTGACTAAAATTTAGCCATGTACAAATACGCAGAGCCCTAAATTTCAAGCATTCTAAAATCTTAAAAAACGCTTTATTAAAATGCGATTTCACTCACACCTAAAGCCTTCATAAGGCGCGTCCTCGCAGATACACTTTTTAAGCTTATTTGCTTCGCGGCGGATCACCTGCCTCCACGTTAGCTCCCTACCGCACACCGTGAGCGTCTCACAAAGGCGCGAGATCATCTTTAGCTCGATCTTTTGCACGGCGTCGTTGCTAAATTTTATCCTGCCAGCGTCCGTTTGGAAGTCTTTTGCGGTGATCTCTTTTTTATTTAGCATGTTAAAAATCAGCGTATCGCCCAAGATCGGCTTAAAAATCTCCGCAAGATCGAGATGTAGGCTTAGCGCGCGGTAGTTTGGCTCGTGCAAAAAGCCGATGCGAGGATCTAGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 10405-9535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUU010000005.1 Campylobacter concisus isolate 2010-36743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 10404 37 100.0 37 ..................................... CTAGCTCGTGCTAGCAACTGATTTTCTATAGCTTCCA 10330 37 100.0 37 ..................................... ATTGGACTGCGGTAAAAACTGTTGGTTGGCAGATTTT 10256 37 100.0 41 ..................................... AAAAACTTTTTGACATTTTGGTTCCTTTAAAAAAATATAAT 10178 37 100.0 44 ..................................... TTTACTACAGAGTTACTATATATTCTTATTAGAGATGAAAAGAA 10097 37 100.0 35 ..................................... AGAACCATGCTGAAATAATCAGCATCATTCTCATC 10025 37 100.0 40 ..................................... TATATCTACCTTAAGCCAATACCAACCTCTGTCGGTAAGT 9948 37 100.0 36 ..................................... ATTCTAGGTCGGAGCCTAGAAATTTTACCACCCTAT 9875 37 100.0 37 ..................................... CAACTGGGTGAGCTTGCACGTCGTCCTGAAAGGCTAA 9801 37 100.0 38 ..................................... GACAATCTTAACCAGAGATCTTCTAGCTGAAAACCTCT 9726 37 100.0 40 ..................................... TATATCTACCTTAAGCCAATACCAACCTCTGTCGGTAAGT 9649 37 100.0 40 ..................................... CATTTTCTTGCTCTTAGAAAAATCACGATAGGGCATAAAA 9572 37 94.6 0 ................................A...A | T [9537] ========== ====== ====== ====== ===================================== ============================================ ================== 12 37 99.5 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACATATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGATATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTTACATAGACTACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 31907-33407 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUU010000005.1 Campylobacter concisus isolate 2010-36743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================== ================== 31907 33 100.0 44 ................................. CAATTCTTTGTTCATTTTTTCTCCTTTGTAAAAAATTTTGATTA 31984 33 100.0 45 ................................. GTATAAACAGAGCCCTTACCATCATAACTAACAACTTCTGGATTA 32062 33 97.0 44 .................C............... CATACAGGACATATTCTTTTACTGTCTGTAAAACACGGCAATTA 32139 33 100.0 44 ................................. GAATATAGGCTAGAAGATATTAAAGAAGAGTGGTTGAAAAATTA 32216 33 100.0 41 ................................. AACCGTTTTTTGGTATATAAATTCATCATAGTTGTTTATTA 32290 33 100.0 43 ................................. AGTTTGTCTTCTATAAAACCTTCTCCATCTAGATTAAATATTA 32366 33 100.0 46 ................................. CTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCC 32445 33 100.0 49 ................................. CCCTCGCTTACCTTGATAAACTCTAAGCGTGGCACTGGCTTTGTAATCT 32527 33 100.0 46 ................................. TACCAAAACGGCTTTTTACCGTCTGGGTATTGCATTTTGGCAATTC 32606 32 93.9 41 ....T...-........................ TCGCCCACATATCACAAAAACGCCGTTTTTCATTTGCATTA 32679 33 97.0 30 ............A.................... GATAGTTTCTAATGTGAAAAATTCCCTCGT Deletion [32742] 32742 33 90.9 44 TGG.............................. GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTAATCT 32819 33 87.9 45 ...............AG....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAGATCT 32897 33 100.0 47 ................................. TTATTTACGTTGTCAAATTCTCCAGCAGCAAAAGCTGCACCTAATTA 32977 33 97.0 43 ..........C...................... ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGACATCT 33053 33 100.0 45 ................................. GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGCATTA 33131 33 97.0 42 ..........C...................... GCAACTAGTAAGCTGCTAACTAAAACCTTTTTCATTATATTA 33206 33 100.0 45 ................................. TAGTTAGCCTTATACCACTTAGCTTTAGCTTCTGGTGAAGTATCT 33284 33 100.0 58 ................................. TCAATTTTTATAAAAACTACTTCTACTTTGGCACGTGCGCTTCTTTCGGCATTTATCT 33375 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ========================================================== ================== 20 33 97.9 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTGCTCTTTTTTGGCTCACGTGAAGCCTGCGAGCAAGCGCTTGCCAGACTAAAGGACTTTTTAGTAACCATAAATTTATCCCTAAACGAAGCCAAAACATCTTTACACGACAAAGATAGCGAATTTACCTTTCTTGGCGTAAATTTCAAAGCTCATGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATTTTGGCAAAACTCACAGCCTCGTCTAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAGCATAAACGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGTAAAAGAGTGCGAATTTAAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAGAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : TAGACATATCTATCGAGCATAGTTCTCGGGCATTAATTCATAGATACATTTTATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGTTAGATACTTACTATAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGCAAATATGGCTTAGTGCAAGCTGTTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //