Array 1 1012-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOOM01000229.1 Dickeya dianthicola GBBC 2039 DDIGBBC2039_contig229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1011 32 100.0 36 ................................ ATTGATGTCGGGCGGACCCATATGCGTGATGCCGTC 943 32 100.0 34 ................................ ATGATAGCGCGTTGGTTGTCGTCAATGCTTGATC 877 32 100.0 33 ................................ TCAGGAGCTGTGTGACTAGCTTAAGTCCACGGT 812 32 100.0 34 ................................ AGCGCAGAGTACGGCGGATACATCTGGTCATCCC 746 32 100.0 36 ................................ ACGTCCGTCTTTGAGCGTGAAAACAATATCCCGGCC 678 32 100.0 33 ................................ TGATGCTCCGGCCGAATTCGTAACGCCCAAATT 613 32 100.0 34 ................................ CTGCGGCAATGGTGGGTAGATTGCGTTAAGTGCC 547 32 100.0 34 ................................ AGCCCAGAGGGCATGAATCAACTTGTACGTTTTG 481 32 100.0 33 ................................ AGCAGTCACGACAGATGCGGCAGCAAACTGCTC 416 32 100.0 34 ................................ AAGTATCTTGCCGATACCATATCGGAAGACCTGC 350 32 100.0 35 ................................ CACTCCCGGCCGCCGGCCTTATTCCATCGTAGCAG 283 32 100.0 35 ................................ TATCGCGCGAGAGCTACCGATAACTCAAGACACGG 216 32 100.0 34 ................................ AATTCCATCACTTGCTCCCCAACTTGTGGTGGAC 150 32 100.0 34 ................................ AAAGGATCCACAAAACTAGTGTCGCCAATTTGAC 84 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : CTGCAGAGCGTCATCCACGGCATCCGATACCTGTGGTCGCGCCCCACGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1535938-1533979 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001838.1 Dickeya dianthicola GBBC 2039 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1535937 32 100.0 34 ................................ ATGATAGCGCGTTGGTTGTCGTCAATGCTTGATC 1535871 32 100.0 36 ................................ ATTGATGTCGGGCGGACCCATATGCGTGATGCCGTC 1535803 32 84.4 20 .......................TC..TG.G. GTGAAAACAATATCCCGGCC CCTG [1535778] Deletion [1535752] 1535747 32 100.0 34 ................................ AGCGCAGAGTACGGCGGATACATCTGGTCATCCC 1535681 32 100.0 33 ................................ TGATGCTCCGGCCGAATTCGTAACGCCCAAATT 1535616 32 81.2 19 .....................C...A..GTGG GTAGATTGCGTTAAGTGCC C [1535592] Deletion [1535566] 1535564 32 75.0 18 ....................C...CCGCCGG. CTTATTCCATCGTAGCAG CCC [1535540] Deletion [1535515] 1535511 32 71.9 21 .....................CAT.AGC.GTT GCAGTCGGGTCCCAATACACC Deletion [1535459] 1535458 32 100.0 33 ................................ TATTATGCTGGTCGGTTTGGCAACTTGCCTTGC 1535393 32 78.1 19 .....................A.TCAC..C.G ATGCGGCAGCAAACTGCTC Deletion [1535343] 1535342 32 100.0 34 ................................ AGCCCAGAGGGCATGAATCAACTTGTACGTTTTG 1535276 32 84.4 17 ......................TATC...T.. CATATCGGAAGACCTGC CCGT [1535246] Deletion [1535228] 1535223 32 100.0 34 ................................ TGCAGAGCGTCATCCACGGCATCCGATACCTGTG 1535157 32 100.0 35 ................................ TATCGCGCGAGAGCTACCGATAACTCAAGACACGG 1535090 32 100.0 38 ................................ TGAATAAAACGAGGAACAGATGCTAACGAGCAACGCAT 1535020 32 100.0 36 ................................ ACCTCCAAGAGGCATGAGCCTCGACCGGGCTAGAAA 1534952 32 100.0 36 ................................ TATCATCCGTGGGCGGTTGAGCAACCTGCATTGCAC 1534884 32 100.0 35 ................................ AGCCCAAGTCATCGGCGACACAGAGTTCTACAATG 1534817 32 100.0 36 ................................ TTTCAATGCTGCCATAGTAACAGTCGATAGACAAAG 1534749 32 100.0 37 ................................ TCAAAGTGATGCCGCAGAGCCACTAATCTGACCCCAA 1534680 32 100.0 36 ................................ AATAAAACGGGAACAGATGATCAACCTGCATTGCAC 1534612 32 100.0 37 ................................ TCAAAGTGATGCCGCAGAGCCACTAATCTGACCCCAA 1534543 32 100.0 33 ................................ ATACAGGACAAGTAGTGCAAATGGTGTAGCCAT 1534478 32 100.0 37 ................................ AACAAAAGCCTACCCACGTCCCACAGTACTATCAATG 1534409 32 100.0 37 ................................ AAGAACACCACATAACCATGCCTAGCAGACTATCCAG 1534340 32 100.0 36 ................................ TTTCAATGCTGCCATAGTAACAGTCGATAGACAAAG 1534272 32 100.0 34 ................................ ACACCACATCTCAAGCAGGACAGAAAGTTGCGGA 1534206 32 100.0 34 ................................ CCGCTCCAGTGTGTGTAGTCTTAATCACATCAGG 1534140 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 1534074 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 1534009 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ====================================== ================== 31 32 95.4 32 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3665568-3664980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001838.1 Dickeya dianthicola GBBC 2039 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 3665567 28 100.0 35 ............................ TTGTCATCGGTCAAACACACGCCAGCGCCGTTAGC 3665504 28 100.0 35 ............................ TTGTCATCGGTCAAACACACGCCAGCGCCGTTAGC 3665441 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3665381 28 100.0 33 ............................ ACATCCCAGTGCTCAAAGCTGGCACTGCGGTAA 3665320 28 100.0 35 ............................ ACATCCAAGATCCCACGGCCATACAGCTGATGTAC 3665257 28 100.0 41 ............................ TTTCTTTGTGCTCAAGATCCCACGGCCATACATCTGATGGA 3665188 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3665128 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3665068 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3665008 27 89.3 0 .......................-..CG | GG [3664985] ========== ====== ====== ====== ============================ ========================================= ================== 10 28 97.5 34 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3674248-3674958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001838.1 Dickeya dianthicola GBBC 2039 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3674248 28 100.0 32 ............................ TTATAGTGACAGTCTATTGACAGTTTAACTAA 3674308 28 100.0 32 ............................ CACTGCACTACCGTGGAACCTGTGGTTCAGGT 3674368 28 100.0 20 ............................ TAACTAATGAGGTATAACAT 3674416 28 100.0 25 ............................ TGCTGCTTATGCCGCTGCCGATGCC CA,A [3674420,3674425] 3674473 28 82.1 32 CCG.CG...................... TACTTTGTAGGTGTTGTGTGATTACCACTAAC 3674533 28 100.0 22 ............................ TATCAAGGCACTAACTAAGAGA 3674583 28 92.9 32 ...A.G...................... GCTCAGCAGGCTGGCAGGCGTACAAGCCAGGA A [3674589] 3674644 28 100.0 25 ............................ ATTTGCGCCAAGAGAGCCGTGCGCC 3674697 27 85.7 33 A.G.G-...................... AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3674757 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3674817 28 100.0 33 ............................ ATGCGCCCCAGCGCTCTAATACCAATTGAATAT 3674878 28 100.0 25 ............................ TGCCAGAAGTCTAACGTGCGGGCTG 3674931 28 89.3 0 ACA......................... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.2 29 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAACAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ACCACTCCGCTGATAGACGTTTAATCTGGCTGTGTTCACTGCCGAGTAGGCAGAGGTTGACGGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3676184-3677714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001838.1 Dickeya dianthicola GBBC 2039 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3676184 28 100.0 32 ............................ TCCCCGTTGTACTCGTTGACCTGTGGTAGCGT 3676244 28 100.0 32 ............................ CACTGCACTACCGTGGAACCTGTGGTTCAGGT 3676304 28 100.0 32 ............................ ACTTGCTGTTACGTTCGTACCGCTCGTCGCTC 3676364 28 100.0 32 ............................ TTATAGTGACAGTCTATTGACAGTTTAACTAA 3676424 28 100.0 32 ............................ ACACAGAGAGGAGCAAGGAAGGAGCAGAGAGC 3676484 28 100.0 32 ............................ TAACTAATGAGGTATAACATGTTCCAACTAAT 3676544 28 100.0 32 ............................ GCACGCACGCCAGCGCACCCGAGTGTACGCAC 3676604 28 100.0 32 ............................ GTTCGTCGCTCGTCAGTCGCTCTCGCTCTGGC 3676664 28 100.0 32 ............................ TGCTGCTTATGCCGCTGCCGATGCCGCCGCCG 3676724 28 100.0 32 ............................ GCACGACGGTAACTTGCTTAAGTAGCTAGTCA 3676784 28 100.0 32 ............................ TACTTTGTAGGTGTTGTGTGATTACCACTAAC 3676844 28 100.0 32 ............................ ACACACACCCACCACCACACGGAGAGCGTAGC 3676904 28 100.0 32 ............................ GTTCGTCGCTCTCGCTCTGGCTCTCTGTCGTC 3676964 28 100.0 32 ............................ ACAGAGAGGAGCAGAGAGAGAGAGAGAGTGAA 3677024 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGAGTTAAGAGTC 3677084 28 100.0 32 ............................ GCAGAAGATGTTATCATTACACGAGTTAGAGC 3677144 28 100.0 33 ............................ ATGCGCCCCAGCGCTCTAATACCAATTGAATAT 3677205 28 100.0 32 ............................ GCTCAGCAGGCTGGCAGGCGTACAAGCCAGGA 3677265 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3677326 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 3677386 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3677446 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 3677506 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 3677566 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 3677626 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 3677686 27 85.7 0 ....................G..-..CG | AG [3677704] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TGCACATCTTTAACATGACCAGTCAGGCCATCCATAGTGGATTCGGCGGTGTCCACCAGTTGCATCCCTTCCTGAATCTTGTCCACCGAATCGTCGATCAGTTCCTTGATCTCTTTGGCCGCCGTGGCGCTGCGCTGCGCCAGCGAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //