Array 1 112498-112264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIH01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0872 NODE_3_length_352737_cov_396.572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112497 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112431 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112365 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 111530-112817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIH01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0872 NODE_1_length_618151_cov_391.363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111530 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 111590 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 111650 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 111710 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 111770 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 111830 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 111890 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 111950 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 112010 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 112070 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 112130 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 112190 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 112250 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 112310 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 112370 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 112430 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 112490 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 112550 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 112610 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 112670 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 112730 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 112790 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGAGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 176748-174019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIH01000004.1 Pasteurella multocida subsp. septica strain CIRMBP-0872 NODE_4_length_192709_cov_402.542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176747 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176687 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176627 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176567 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176507 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176447 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176387 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176327 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 176267 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 176207 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 176147 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 176087 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 176027 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 175967 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175907 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175847 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175787 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175727 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175667 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175607 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175547 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175487 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175426 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175366 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175306 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175246 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175186 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175126 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175066 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 175006 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174946 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174886 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174826 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174766 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174706 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174646 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174586 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174526 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174466 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174406 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174346 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174286 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174226 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174166 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174106 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174046 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //