Array 1 43278-43584 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIGG010000006.1 Streptococcus pyogenes strain K49294, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                                                                                                	Insertion/Deletion
==========	======	======	======	================================	===============================================================================================================	==================
     43278	    32	  50.0	   111	TAT.A.AGAAGTT.T...T...T.T......A	TGATGCGTCGTCTGCACGTCCGGAAGGCTCTATGCGAGTTTGTGAAGTCTTTTGGTTTACGCATTCAAGCAAACTGGGGAATGTTTCAAGTGCGCGTGTCTTTGACTTGTT	C [43299]
     43422	    31	  59.4	    33	AGAGT.T.A.CA..CAA.-.............	TTTAATAAAAATCAAAACAGCGGTATTTCCTCA                                                                              	
     43486	    32	 100.0	    35	................................	CAAAAATATCTGAAGAAGAATCCATTTTAAGATCT                                                                            	
     43553	    32	  96.9	     0	...............................G	|                                                                                                              	
==========	======	======	======	================================	===============================================================================================================	==================
         4	    32	  76.6	    60	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                                                                                               	       

# Left flank :   ATGCCTCGTACAGATGCCAAAGGATATGGTGTGATGAGTGATGTCTCCATCAAACGTAAGATTCGTAATCGTTTGCAAGATATGGGGAAGTCTATTTTTGTGCAAGCTAATGAACGTATTGAAGATGACTTTCGTTCACTAGAAAGACGCTTTTCACAACATTTTACAGCTAAGACACCTGACAAAGAAATTGAAGAAAAAGCAAATGCATTATGGTTTGATGTTCGTGCTTTTGGACAAGTTTTTACTTATCTGAAAAAATCAATTGGGGTGCGTGGACCAGTTTCCATCAGTATGGCTAAGTCCTTGGAGCCAATTGTCATTTCCAGCCTTCAAATTACGCGTAGTACCAATGGTATGGAAGCTAAGAATAATAGTGGCCGCTCTTCTGATACGATGGGGACAAAACATTTTGTAGATTATGGTGTGTATGTACTTAAAGGTTCTATCAATGCTTATTTTGCTGAAAAGACTGGTTTTTCTCAGGAAGATGCTGAGGC
# Right flank :  GATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTTTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGATAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGTCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACTATTAAGAGCTTAC

# Questionable array : NO	 Score: 2.87
# 	Score Detail : 1:0, 2:3, 3:3, 4:-0.17, 5:-1.5, 6:0.25, 7:-3, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.09%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [15-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9,0.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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