Array 1 521367-522370 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQK01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 108 NODE_1_length_790942_cov_16.0537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 521367 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 521428 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 521489 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 521550 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 521611 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 521672 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 521733 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 521794 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 521855 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 521916 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 521977 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 522038 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 522099 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 522160 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 522221 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 522282 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 522343 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 538629-540735 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQK01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 108 NODE_1_length_790942_cov_16.0537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 538629 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 538690 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 538751 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 538812 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 538874 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 538935 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 538996 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 539057 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 539118 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 539179 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 539240 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 539301 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 539362 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 539423 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 539484 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 539545 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 539607 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 539668 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 539730 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 539791 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 539852 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 539913 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 539974 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 540035 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 540096 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 540157 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 540218 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 540279 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 540340 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 540401 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 540462 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 540523 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 540584 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 540645 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 540706 29 89.7 0 A...........TC............... | A [540732] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //