Array 1 13793-14047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000091.1 Microcoleus sp. FACHB-84 contig91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 13793 37 97.3 37 .......C............................. AAGGGTTTTTCTGCTATCACTTCGATGATTTCGATGC 13867 37 100.0 35 ..................................... AGACCCGCAGGATTTGAATTGGTGATCGTATTGCT 13939 37 94.6 35 ...........C.....T................... ACCCTGACGAAGCCACAAGCATTAGCTTTACTTGT 14011 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GCCGCAATCAAACTAAACCCCTATTAGGGATTGAAAC # Left flank : CGGTACGGACTCAACTAGAAGCGGATGCCAGCCGTTTTATTCACAATCCTGATAAGGTGCGATATGATGCCCAGAAAAAGACGCTTTATTTGAGCAAGATTTTTAAGTGGTACGGCGAGGATTTTGTAAAGGCGGCGGGTTCGGTGGCTGAGTATGTGGGCGGTTATTTGGGGCCGGAGGCGGCTGTGGGTGATGGATGGGCGATCGTTTTTTTGCCTTACGACTGGAATTTGAATCGGGTTGAGGGTTGAGATTTCCGGGAAGGGGTAGGTGTTTTTTTGGGGGTGGTTTTTTCGGTTGTATCGCTGGCTATGTAAGGATTTGAGCCACTTTCAGAAAAAAATAGGTTGGCGGAAACGCTGTAATGCTTGCTGTGATGGGTTTTGAGGGCTGTTGAAAATTTTGCCTCTTGACAGGTCGATCGTTGAAAGGGTACTTTTTAGATCGTTGCCGCAAGTGTAGCTTGAAAACTAAATAGAGTACGGCTTTTAGATATGCTA # Right flank : CTAACATCAAAACCCAAAAAAGACTTTTGTGCAAGTTCAGCAGGTGTCCCAGCCTCCATCGACAATCGACTCACAAGTGACATATTAAAAACTATCACAGTTCAAATCCTCTGGAATATTAAAAATGATTTCAGATAAATTTCGGCGCGAGTTGCGAGAACAAGCCAAACTCTGGCAAGCAGAAGGACTCATCGACACTTCATTCTACCAACAACTTTCGGAACGCTACCAATTCAACACACTCGAAACCGCCTCCCGCAACCGATTCCTCAGCATTCTGATGAGTCTCGGCGGCATTCTCCTCGGTATAGGAGTCATCACCTTTGTAGCCGCAAACTGGCAAGTTTGGTCGCGCGAAGTGAGAGTAGCGCTGCTGCTAAGTCTTTTCGTAGCAGTCAATGCAGCAGGTTTCTATCTGTGGCGAATTCCCCCATCCCGAAGCCAAAACTCCCATCCCAATATGCCCGCAACAAAAGGGCGAAACAAACTCCTAGGTGAAG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATCAAACTAAACCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5870-5608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000092.1 Microcoleus sp. FACHB-84 contig92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 5869 35 100.0 42 ................................... GTTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTG 5792 35 97.1 45 .......G........................... CTGACCTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAA 5712 35 97.1 35 ...............C................... CGCGCCGCCTGCACGACGAACTGCACATCACCCGC 5642 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== ============================================= ================== 4 35 97.8 41 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAA # Left flank : AGACTCCTTGCGCTGTCTGGGGTGTAGAATGGAGGTGAAACTAATTGAATGGAATGTATGCGGAAGTTAGTTTTCTCAGATACAGAAATGTTTTATCGTGAGCTAAAGACAGCCTTGGAGCAAAGTGAGCAAGTTGAAGTTATTACAGACTACGAGCGATATTCAGACCTTCCAGAGAAGTTAAAAACCATTTTTGAGTTACACAAGAACAAATCCGGAGAGTGGGTAAATATAGCTACAGGCGCATTCATCCCTTATTCTGCTGGGGTTACTGCGCTTAACTACTCTGCCCTCTATATTTTTGCTCATGCAGCAGGTGGAGGTGCTCTTGGATTCATAGTTGGTGGTCCTGTTGGAGCAGCAGTTGGCGCTGGTATCGGAGCCTTAGTTGGAACTGTTGCTGTTGCGACATCAAGCGGAAGGCATCATGTAGATATAGAAATTGAGGCGAATGGTAAACTCCGGCTTAAGATTAGCCCAATCGATTGAACAACGCGACA # Right flank : CTTAAAAAAGCAGCCAAGGTTTCCATCTTGACTGCTTTCAATTTTCCCATTCACTAGAAAAATACATGACTTACACAGTCATACTAAAGAAACCGGGTTTTTTACCTAATATGTGGGTTCCCAGCAAGAATTTTCGTAAAAAAAACCCGTTTCTGACTTCCCCTGCATCCTAGACTAAACTAATTGAACAGACACTCCCTACAAAAGCAAATCCAACAGCAATACAAACCCTGTCAATATATACTTTTTTTTGACTTTTGCTACAAACATTAACCTAACTCCTGGCCGGGCACGGCAATGCCGTTTCCCTACGGATGAGAACCTCTAATTTCTATGTATCAATATTTTTCATAATTAGTATAATTTTTTCTCCTGTCAATCAAGCATCCCAGTCTCAGTCCAATATTCTTCAATAGACTTGAGCTAAAAAAGGGCGATTTATCAAACCATGTAAACAATAGATTGCGACTTCCGCGCCAATATCGAAGAAACCTGGTTTT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 34669-34486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000024.1 Microcoleus sp. FACHB-84 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 34668 37 97.3 36 ..G.................................. CCAGCAGTCAGCACCCTAACTAAGAACTTCCGCCGT 34595 37 100.0 36 ..................................... CTTGCCTCTTTCATTGACAAAAAATACGGACGGAAA 34522 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GCCGGAAACAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TGCACCCCGTACAACTCCTCCCCGGCGCTATCTCTGAAATCCTCGCTTCTGTAACCGATACAGGCGTTTTGACTCTGGCGGATCGCTACGGTTTGATGGCCGCCACCTTCGACGACTCTCTGAATGACGAAGACAGAGGCTGTATCAACCGCTTGCTGCGGGCGGTGCTCAGAGGCCGAGTGAAAGTAGTCAACGAACTTTCAGCAGCATTCTAATCGGGATTTGAAGTTTGGTTCTGAAGGCAAGGTGAGTCAGCGGTAGATGAAAATAGTGGAAACTCAGGCAGGAGTGGAAACAGCGGTAATTTGAATTCGATTTAAAAGTTTTCTCCTCTAACTCAACAACGGTTTTTTTGTCAAAGCAGCCTTTACCGGCTGCTTTTTTTTATTTAATCGCGGATTTCCAGGTTGTACTGGCGGCAGAGGTCGATCAGTTCTTGTTGGAAGCGATCGCGCACATTGAAACTTGTGTTTTAACCACGTCTAAAGCTTCAATTTTGG # Right flank : TTTCCGAAGTATTCACCAGAGGAGGAGACAGGAGGAAAGAGGGTATTCTTCTCCTGACTCCTGACTCCTGACTCCTTCACAAGCCGGAAACAAGTTTACTTCCAACACTTGTCACAGCACAGGTAGTGGTCATAGATAATCTCACATTTGATAAAAGTGGTCGGATTCAGGAATTGATTCAAACTGCAGGGTGTAGACTATTATATTTACCGCCATACTCTCCAGAGTTTAACAAAATTGAACAAAGAAGAGTCTTGGCTAAAAAGTCAAATTCGCAAACAGCTTGATGAGTTTGATTGCTTACGTTTTGGCCACCCTTGGATGTCTTGCGCCTTGCATCCTAACATGAGCGGTTGCTATATGTGATTTCCCCGATTATTCAGTTGAGAAAACCTCAAAATTATGACCAATCAAACAACTTCTCCACTCCTACTCAGCCCCTTCAAAATCGGAGATTTATCCTTAAAAAATCGGGTAGTCATGGCACCCCTAACGAGAGC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAACAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 9157-10565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000034.1 Microcoleus sp. FACHB-84 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 9157 36 100.0 43 .................................... TTCATCCGTCTCGTTCTTGCGAACTTCGTTAAATACTTGACCT 9236 36 100.0 46 .................................... GTATAAGAAGGATAGAGATAGAGGACTATTGAGTTATGATCATTAG 9318 36 100.0 42 .................................... CCTGGTTTATCTCCGGGGGAATAAGGGCAGTCGAGGAGTCCT 9396 36 100.0 40 .................................... TCGTAATATTTAGCAAGCTGCGCTCTACCGTTTTTACCTG 9472 36 100.0 37 .................................... ATGTCCTCTTTCGAGAACACAGATTCTTTTTTTTCTA 9545 36 100.0 39 .................................... ATGGCTAGGTTCAGTGTTGCCAATACGAAGATTGCCAGC 9620 36 100.0 41 .................................... GTTAATTTTTTGATTGCCGTATCTAATTCTTTAGCTCTTTT 9697 36 100.0 38 .................................... GTAGATAGCATCCACCGAATCTTCATGTAGTTATCGAA 9771 36 100.0 46 .................................... ATTGGAATGCGAGAGATCGCCTCCTTAGCGGATTCAGTTGCGGATT 9853 36 100.0 47 .................................... TGATGTTGCTCTTGTGCCATTGAGATGAGTTCAGCTTTCTCCAGCGC 9936 36 97.2 42 ..G................................. GGTGATGGCGAAATGATTTTTAATTCAAGATTGCCACTTACA 10014 36 100.0 42 .................................... ATAACAGACCTAACAAGCATAGATCCTTGTGCGTTTTTTGTA 10092 36 100.0 34 .................................... ATACTAGGAACGAGTAATTAGGGTCTAAGTCTAC 10162 36 100.0 34 .................................... GCTTCGACCCAAATCGTAGCGCCAGAACACCGGG 10232 36 100.0 42 .................................... AGTTCCTTCATTTGTACTTCTAGTTGAGCAACTACGGGGGAA 10310 36 100.0 41 .................................... TTTGGTACTGAATGCAAAACTCGGCTGTTAAAAGTTACAAC 10387 36 100.0 36 .................................... CAAAAAACTTTTGGTCGGCTGCACTTAACTGTCGAT 10459 36 100.0 35 .................................... AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG 10530 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 19 36 99.9 40 CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Left flank : ATCCCTATTCAACACAAAATAGAATTCGATAAAGTATGCCGCTTTATATCGTTGTCTACGATATCCGAGTTGACAAGCCCACGCAAAAAGTGCATGACTTCCTGAAAGGTTATGGCAAATGGGTGCAATATTCTACCTTTGAGTCTGTTTTGTCAACTGCCAGATTTACAGGACTGCGGCGACGGCTGCGAAAGTTAATCAACCTAGACGCAGCATCCGGTTTTATCCGGTGTCGCGCCATACTTTGGGACAGGTGGAGGTTTTGGGAGTGGGGGCACCGGTGACAAAAGCACCTGGGTCAGTGATTATTTAGCTAAGGTTGCGAGGCTGGTGGTAAATTAGCTCAAACGACCTTTTTCCTTCGTGAGCCTCGCAGCTTTACTGGGCAAGGGTTTCAAGGATTATTATGAGCGAACACAGGTGTGAGTTCCACAAAAAATATCTGAGCCTCGCAAAGGGCCTCTAGACACCTTGCCCTGTATTGGGTGTATCATAGAGGA # Right flank : CGCTAAAACAAAATTAGTGGAAGTCTTCTATTAATGCGACAGTTTAAGGGAAACCATAAATAGCTGTTGACAAAAGACTAGATTTCTAATAGTCTAGTTTTGGGGGGATGCCTTTAGGGGACGCCTCTACCGCATAGAATAACGTCTTTAAGGCATCGTCCTATCCCCCAGCCGAAGTGTTACGGCACTTACATTGTCACTGTCTAGCAACTTACATTGTCACTGCCTAGAAATAGGTAGCTAAGACAAATTTAGTCGAAGTCTCTATTAATGCGGAATCGAAGGAGGCTTCGACTCCACCCGACACCGCAAACAGAAATTAAAAAATCAGAGCCTTCTGTAGTGCCAAAAGCTCTAAATTTTTAAGCTCTGGAAAACTCCAAAGACAAACTTTTACAACTCAAATTTCTGCAATTAATCCTAGTTGCGAAGAATTAATAAGCACAAAAAAAAGCCCCATAATCGGGGCAAAATATAACTATTCTCAGTCGTTGGGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 182689-179672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000032.1 Microcoleus sp. FACHB-84 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 182688 37 100.0 34 ..................................... ATAGAAAATACTTCAAGCGAGGCGGTTGAAGTGA 182617 37 100.0 35 ..................................... GAACCCGTTGATTCCCCCCCAGAAGATGTAACCGA 182545 37 100.0 37 ..................................... AAATAATCATCATCAAGAACATCAAACTTAGAACTAG 182471 37 100.0 35 ..................................... TAAGGCTATTCTAAATAGGCCCTAGGCGATGTTAG 182399 37 100.0 35 ..................................... TGAAAATTTAGGTACGTCGGTACAACCAATATTTA 182327 37 100.0 34 ..................................... TTCAACCGGGCATAATTCCAGAATTTGAAGGTGA 182256 37 100.0 39 ..................................... GAACTGACTGACCTCGACGCGCAGCGCTCCTTTAATCGA 182180 37 100.0 33 ..................................... GGATTCTAGCGGCGGCTCCTGGGCTTGAATTCC 182110 37 100.0 34 ..................................... CGTCACAGTCATCAAATCGGCAGAATGGCCTTGA 182039 37 100.0 34 ..................................... GCTGCTGCGGTCGGGTAGAAAAAAGAATCGGCCC 181968 37 100.0 36 ..................................... GAATGTAGAGGTTGGCGTCCTGGTTGGTCAAATAAG 181895 37 100.0 33 ..................................... CCGCATCTCCTCAATATCCTTCTCGCTGTAGAA 181825 37 100.0 36 ..................................... AAAAAAGAGGTAAAACTTACGAAAAAAGAACAGCGG 181752 37 100.0 35 ..................................... AAAAACACATGACAGCACTAGCAGACGGCGACATC 181680 37 100.0 35 ..................................... GGGGTAAGGTGCTTCCTGATAAGAGGGCAAGTAAA 181608 37 100.0 36 ..................................... TTAGCCAAAAGTGAGCCAAAACTGAGCCGCCACAGA 181535 37 100.0 36 ..................................... TATGAACTTCCGCAAGTGGGCGAAGCAGAACGTCAA 181462 37 100.0 34 ..................................... TCCGGCATTCTCGGCGGCGCGACGCAAGCCACGC 181391 37 100.0 36 ..................................... GGCGCAAAAGGCAAAATGCAAAGCGCTTTCCATAAT 181318 37 100.0 41 ..................................... TACGACTTGGAATTTGTGGAGCCGTCCGAGGCAGAACTAAA 181240 37 100.0 32 ..................................... ATAGATACTAGCATCTCCTAACATGATTGCGT 181171 37 100.0 38 ..................................... ACTTCATAGCAGCTCGAAATTTGGTCATCGTATACAGG 181096 37 100.0 33 ..................................... CCATTATCTCATAAAATCCCTGCGGCGCTTTGC 181026 37 100.0 36 ..................................... CCAGACCCAAGACAGCTCGAATTAGCATTCTAAACC 180953 37 100.0 36 ..................................... TCCGAAGAAGGCTTGCGGAAATTAGTTCGCGCTTGC 180880 37 100.0 38 ..................................... CCGACCGATGAAATGTTTTCCCCATCCCTATCTAAAAA 180805 37 100.0 40 ..................................... GTTGGTTTCTTGCCTAGTATAAAGTCGCATTCCATTCAAG 180728 37 100.0 35 ..................................... AAACAGCGGTTAGGGTGTATACAAAACAAGCTACC 180656 37 100.0 41 ..................................... GCCGATGGTGACAAAACCCGATTACTGCGGCGAGCCTGCTG 180578 37 100.0 33 ..................................... CGGTTCTCCTGTAAATTCGTCCATCCGATCGGC 180508 37 94.6 36 ...............C...............G..... CGATCGGTCAAATTCTGTGGCCCATTTCCCGCTGGA 180435 37 100.0 36 ..................................... AAAATTGCCGCCGTTTGAATTCTGAATATTAATAGC 180362 37 100.0 35 ..................................... AAGCGACCGGGCATTTGTGCCACGACTTGGAAAAC 180290 37 100.0 35 ..................................... GTAGATTCGCGGTTAATTGCCGAAAGACTAGGTAT 180218 37 97.3 35 ....G................................ TAATTTTTCCCATTCTTTCAATTCAATTCCATATA 180146 37 97.3 35 ....G................................ TATAGGGTGTACCGATTCAATCTGCACGACCTCGC 180074 37 97.3 34 ....G................................ TCAAGGAACTTAAGGAAATCGGCTACCAGCTCAA 180003 37 97.3 36 ....G................................ TTCAATCAGAGCATACAGGCAATTGTCAATAATTTG 179930 37 97.3 36 ....G................................ CGCCAATCATCGGAACTCTTGGGCGGTGCCTCTTGC 179857 37 97.3 36 ....G................................ GCAATTGTAAAACCTCCAGTTGCAAGAGCACTTCCG 179784 37 97.3 38 ....G................................ AGTTTGCGCCCACAGCAAACAAAACCCTAACAGTGCAA 179709 37 91.9 0 ....G................C.......C....... | T [179684] ========== ====== ====== ====== ===================================== ========================================= ================== 42 37 99.2 36 GCCGAAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TGAGGAGATTGATTCCGGCTAGGACTCAAATCTAAGTTACGATCGCCACGCCGAACCAAGTCATCGAACCAGTTGAGGAGATGGATGCAGGCTAGGATTCAAGTCTAAGTTACGATCGCCCTGCCGAACAAAGTCATCGAACCCAAGGAAGACTGTATTTTGTTTTTTCCGCTGTGCGCTTGCTGTCAGACTAAGATCGAAGGTATTGGTGGCGTAGAGCCCGTTGAGCGCACAATATTTTTTGCTGAGTTTGCGTCAAGGGGTAGGTGTTAAAATCCGAGTATCAAATTTTTCGGCTCAAACTCATGTGCAGCAAGAGTTTGATGCCCCTCGTGTGAAAAAAAGATTGACGGAAAGTCTGAAAGCTTTACAGGATAAGGTTTTGGAGGGAGTATGGAAACTAGGGTATTGACAAGCCGAAGGCTGGAATGGTACTTTTCTTTTAGATGGACGCAACTGCACCTTGAAAACCAAATACACCCTGGCTTCTGGAACGGGCG # Right flank : CTCCAAACTACAAAATTATTGGCTCAAAAATAGACCTCTCCTCTCTCTTTTTATCTCCTCCCATAACCTCAAGCAATCGATCGACTACACGCCTCCAAGTAAAATTTTCAGCCACAAAAGTCGGGCCCGCAACCCTAGCTTTCGCAGCGATTCCAGGCTGTTCGATCGCCCTGCACATCAAATCAATCAAATGTTCCCCCTCTGGAGCTAAGATAAATAAAGTTTCCCCGTTGATCGTCACATTCGTAAATTTACTTTCAATTTGCAGTGCAAAGTCCGATCGCGTAAAATCATCTGTAGGGCCGCCTGCAGTGCAAATAACCGGCAAACCGCAAGCTGCAGCTTCCAACACCGGCAGATTAAAACCTTCCGCCAAATAGGGAGAAACATAAGCATCGGCAGCTTGGTAAAACTCTGCTATTTGAGCAAAAGATAGCTGGCTACCCGTATAAATTAATCTCGGTAAAACCCTCGCTCTTTCCGCATCGTTGAGCACAACT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGAAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 31420-31227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOL010000037.1 Microcoleus sp. FACHB-84 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 31419 37 100.0 39 ..................................... ACTTGAGACATTCCATCAAACGACATCTCTGCGGCTCTA 31343 37 100.0 43 ..................................... CATGTGGATATTTTAGGCGATGGTTAGCTTTGTGTTGAGCCGG 31263 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 42 GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Left flank : CGGGCTTGAAGGGTGGGACTTTGGGGGCGATTTGGGGCAGTTTTTTGGGGACTTTTGCGGGTGCTGTGTTGGGGGCGTTGGTGTCTGCGATGTTTCCGGCTGTTAGCGCTGGGGTGCCGGTGCAGTTGGGGCCTGTGGCGGGGGCGATCGTGGGGGCTGGTTTGGGGGCGATTTGGGGCGTGGTTTCGGGTACTGTTTGGGGGGCTTTGGGTAAGTGGTGATCGGGTTGATGTCTGTTTTTGGGTTGAAAATGCGTCTATGAGTAGGTGTAAAAATCGAGGTGTTAAATTGGGGGGCTAGAATGTACGTGCTGCAAGGGTTTGAGGCTCTCTGTCTAAAAATACGATTCACGGAAAGTCTGAAAGTATTACAGGATAAGGCTTTGGAGTGAATATGAAAAATTGGGTATTGACAAGTCGAAGGCCCAAATGGTACTTTTGTTTGAGATTCACGGAACTGCACCTTGAAAACTAAATACAGCAAGGCTTCTAGAACGGGCT # Right flank : GTCCAAGCAAACTGAACCCAGCCATAAAAGAAAAGCTACTTTCGGGGTATGAGTAGCAACGGAACAGAAACTCCCGTTAAAGCTGTAATGCTTATCTGATAAGCATTTTAGAAACTGCTTGTTAGTCTCAATGAGACGTACCAATTAAACTTTAGGCTATTTGGTACAGAGATCTTGAACGGAATAGCAAGGGTTTCAGGCTCCTAGTTCTCAGCAGGTTCAACTGGTACACCTCTTAGCGGTGTTTTCTGTTCCGTTGCTACTCATACCCCGTTCTGCTAGAACTACCTTTACCCCTATAAGTGCTTTTACTCCAATGTCAAGATTGTTACTGACTTCTTCTGTAATTCTTTATACATATATATTTTTTTCATAAATATACTTAGAAGCTATTTACATACTGAAATAGCTATGACAGGATAAATTAGTACAGGAAACCAGCTTGATGGAGTATAATCCGAAACAAGATTAAGGTTTTTTCCAAAATCTCTGAACTTCCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //