Array 1 276983-275445 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHVA01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4 SEETLT22_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 276982 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 276921 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 276860 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 276799 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 276738 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 276676 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 276615 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 276554 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 276493 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 276432 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 276371 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 276310 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 276249 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 276188 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 276127 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 276066 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 276005 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 275943 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 275840 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 275779 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 275718 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 275657 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 275596 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 275535 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 275474 29 96.6 0 A............................ | A [275447] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295097-293115 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHVA01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4 SEETLT22_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 295096 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 295035 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 294974 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 294913 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 294852 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 294791 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 294730 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 294669 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 294608 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 294547 29 93.1 33 ..........................A.C GGCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 294485 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 294424 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 294363 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 294302 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 294241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 294180 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 294119 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 294058 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 293997 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 293936 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 293875 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 293814 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 293753 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 293692 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 293630 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 293569 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 293508 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 293447 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 293386 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 293325 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 293264 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 293203 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 293142 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //