Array 1 15799-18346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECH01000046.1 Vibrio cholerae strain OYP4A01 Vc_OYP4A01_Contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15799 28 100.0 32 ............................ TTTTTCAAAATACCAAAACAGTCCTGAATCTA 15859 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCAGAAGTTTTCGC 15919 28 100.0 32 ............................ TCTCCAGACACGCCATCTTCTTGAATTAATCC 15979 28 100.0 32 ............................ TCACTTAATGAATTTTTTCTTTGCCAGAATTG 16039 28 100.0 32 ............................ ATCCTTTTGCTATCCGTTTGCCATCCATTTGC 16099 28 100.0 32 ............................ TCTTACTGACGAGCAAATAAAGCAGCTTGGTT 16159 28 100.0 32 ............................ AGTCGAGATTTACGCAGGGGTAGCCCGTCTAA 16219 28 100.0 32 ............................ ATTAAATTAAGAGTGCAACATTTTTTAGCATT 16279 28 100.0 32 ............................ AATATAAGCTTCTGGTGCATCATGCAAAAGGC 16339 28 100.0 32 ............................ GGAACTGGAAAAACCCACTTAGCCGTGGGTAT 16399 28 100.0 32 ............................ TCTCTGGCGCATTTGCATGAGCTGTTGCAGTA 16459 28 100.0 32 ............................ TCAAGCAGAAACAAGATCCGACGCATCTCTGG 16519 28 100.0 32 ............................ TTTCTTGGTGTCTAACTCCACTACTGACGGCG 16579 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 16639 28 100.0 32 ............................ AGATTCACGCGCTACAGACTGAGCGCTCGCCT 16699 28 100.0 32 ............................ AATCACATCGCCAGCCGGAATCATAGGAAGCC 16759 28 100.0 32 ............................ GATAGTACGTTTTGCAAGGTACGCCGCGCTTC 16819 28 100.0 32 ............................ ATCTGGCAGTAATCGCCCATTGCCACGGCCTG 16879 28 100.0 32 ............................ AGTAACCACTAAATACCAAGCCGGATTAAGAA 16939 28 100.0 32 ............................ GCTTTGCGGCTGTTCTTGTATTCGAGCTGACA 16999 28 100.0 32 ............................ TTTGTTCATGCCCAATGCGCCATCAACGGCTT 17059 28 100.0 32 ............................ GTTATCGGCGATTAACGGCGTTGGCGGCTCTG 17119 28 100.0 32 ............................ TAGATGTAGTTATCAGGGTTTAGACCAAATGC 17179 28 100.0 32 ............................ TCTAGCTTTAATAGCAAAGAGTAGCATTGAAC 17239 28 100.0 32 ............................ ATTAGTGGTTAGCTTTTTTTTCGCCCAACGAT 17299 28 100.0 32 ............................ TTCAGCGATAGCGACGGGACTTTTCTCACAAG 17359 28 100.0 32 ............................ TCGAATTGATAACCCATCTTTTCTAAATCTAT 17419 28 100.0 32 ............................ GTTGATATGGATGGATAGGATCGTAAATCCTA 17479 28 100.0 32 ............................ TTTATGTTAAAGCACCCAAATCCATCGCTTTT 17539 28 100.0 32 ............................ AGTTCTAATAACAAAACCGCGCAGTTCGATAG 17599 28 100.0 32 ............................ AAAAATCTGACCTTCCCACAATATTCGGCATT 17659 28 100.0 32 ............................ TAGCATTTGCAAAATGCCTCTGTAGCCTTGCA 17719 28 100.0 32 ............................ TAATGCTCATTTCAATAGTCTTAAAATGCACT 17779 28 100.0 32 ............................ AAAAAATCAGGGAGTGGGGCGCAAGCTTCGCG 17839 28 100.0 32 ............................ TTAATAGCCGTGATCGCCATGCGCCAGATTGG 17899 28 100.0 32 ............................ TTTACGGCATAGTCATATAAAACAAAATCACT 17959 28 100.0 32 ............................ ATTGCCGACTTTGACGCTGCGCTTTTGCTGCG 18019 28 100.0 32 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTT 18079 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCACGACCGCCT 18139 28 100.0 32 ............................ TGTAAAGCAAGCATGTTTAACGTGCCATTCTC 18199 28 100.0 32 ............................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 18259 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 18319 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //