Array 1 381475-381117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024785.1 Nostoc flagelliforme CCNUN1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 381474 37 97.3 34 ...........A......................... ACACCACGGGCAACCAACGGGGCAACCATAAAGC 381403 37 100.0 34 ..................................... GGGAAAATCTGCTGATAAAAAAGATCCTGATAGA 381332 37 100.0 142 ..................................... CCGTCTTTGTGGTAGGACTGGCTGCCACTAGCCACATTGCAAGGGAGCATCCACTTTTGGAAGAAACATAATTTTGGTACTCCAAAAACCCTACTATATAGTTCATCTAAAAAAGTAGATCCGCCGAAAGTGGATGCTCCCC 381153 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 4 37 99.3 70 ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : AAGCAGAACTCAATCAAGTTTCTGCAACTCCTACCCTTGTCAAAGTTTGGCCGCACCCAATTCGGCGAATCGTTGGAGAGTTGGATCATGTAGAAAAGATTTTACAGATGTTAGCTGCCAAGGAAAAATTTTAAGTTTTATAACGAATTGAGGGTAAAAGTGAAACGCAGAGGTTTGATAGGTGGCAATTGTTTTCGCTAGAAATGAAAGAAAGTTTGTACTAAACTCATGGATGATGAACTGCTTTGCAATCAGACTAGTTTTTTTGCCCAGTGCGCGAATGGGTAGGTGTTGGTGAAGAGGTGACTACAATAATGGCTGAATTGCCGTGTATGCAAGGACTTGACGGCTGTAGAATCTTTAAACCATCCGCCCACCTTATGTGGGCTGGCTTTCAGTTATTTTCGTTTAGCACAATTGCCACTCCTCATGTTATGATTTTCCTGTTCGCGCTATTGAACCTTGAAAACCAAATAACACAAGGCTTTCAGACGCCAGCG # Right flank : AGGGAGCATCCCACTTTTTATTATTTAAAAAAAGGTAAATAAAGCATGAGAAGGTAAAGGAATAATCTACGCGATCGTGTTTCTGGGAGCCGTCATGACTGAAGAAGAAAACCAACTTTTAATCGAACACGCTCGTGCGATGCCTACGGCGGGCTACGCCAACGCTAAAATACTCTACAAAGACGCTCCCATTGAGGAACTAACAAGCGTCAGGGTTGATTGAAGAAGTAGTACGCAGTCAAATGCAAGAACATGTAATGCCAGAAGTAGGTGTTTTTTTATCGAAAATGTTACAGGAGAAAACACAGGATACAGACGAGAAATAAAAAGTATTATTGGAAAACTACCAGTTACAAGTTCTCAAGCACAAAAGCTAGAACTCAGACCACATAGCCAATTAAGCCCATATTTAGAGGCATGTTGTTTAAGAGCGAGTGCTTCAGTATCGTACCAACGTGCAGCAGAAGATGTAAAATATGCAACTGGGATACGAGTATCAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 394300-394479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024785.1 Nostoc flagelliforme CCNUN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 394300 36 100.0 36 .................................... GCAGCGTTGCAAATTTCTTTAGAGGTTGCAGCAACA 394372 36 100.0 36 .................................... AAGATTGCTGTAGGCACAATCATTGCTCGTCTGTTA 394444 36 86.1 0 ...............................TGTTT | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 95.4 36 TTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AAAATAGAGGGAATTGTAGTACTAGGACGGGCTACTATTTCTCCCGCCGTCGTCAGTGAACTTTTAGAACGTCACATTTGTTTAACATTTCTTACACAAAATGGACGATATTTAGGGCGTTTAGAACCAGAAGTTACCAAAAATATCTTTGTTCGTAAAGCCCAATGGCAAGCTGTGGGAGAATCACAACCAGCAATCCATTTAGTCAGAGGATTTGTACGGGGTAAATTAAAAAATTACCGCCATAGCTTACTTCGCACTCAGCGAGAACATCCTGATATTGACCTGAATAATAACATCACTCGATTGGAAAAGGCGATCGCACCAATCGAAAAAACTAGCAGTATTGATTCCCTCAGAGGTTTAGAAGGTGCAGGTAGTGCAGCCTATTTTGGTTGTTTTCAACAGCTAATCAAAACCCCATAATTTCGATTTTAAGCCAGACGCCGCCGCCCACCAACCGATCCAGTTAATGCCCTACTGAGTTTCGGGTATTCATT # Right flank : TTGCTCAATACCCAATACTTCTGATTCAAGGCACTCAGTTCGGCTCATTCGTCCCTATTAGGGATTTGTTTTGCTCAATACCCAATACCCCATTCAAAATTCCACAATTACCGGCGTATGGTCGCTAGGTTGGGCTAATTTTCTGGGCGCGACATCAATAATGCAACTTGTAGCACGCTCATACAGGATAGGTGTGAGATAGTGATGGTCAATCCGCCAACCTAAGTTCCGACGGAAGGCGGCGGCGCGATAATCCCACCAGCTATAATTTCCGCCTTCTGAGGTGAATTTGCGAAAAGCATCAGCAAATCCCAATTCCAGAATATCCCGTAAGGCTTGGCGCTCTGATTCTGTTGCCATAATGTGATTTTCTGTACTCACTTGCTCGTGAATATCCTTATCTTCTAGGGCGATGTTGAAGTCACCGCACACACAAATTGCAGGTTGTGACAGCACCAACAATCGTAAATACTCGCGTAGCGCTGTCAACCAGCGCAATT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 2644474-2645113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024785.1 Nostoc flagelliforme CCNUN1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2644474 37 100.0 36 ..................................... ATTAATCCTCTTAGGGTCATCACTAGCACTCCTGTT 2644547 37 100.0 40 ..................................... AGTACGACTCTCAAGTAAGCAAAACAGCAGGGAGTTGTGG 2644624 37 100.0 43 ..................................... CTCCCCGCAGCGCTCACAAATTTAGGCAGTTCCCCAACCCCTA 2644704 37 100.0 34 ..................................... TATGCGCGGACTGCCAATTGATCTTGCTATCCAT 2644775 37 100.0 37 ..................................... AACGGATTGCGGAGAGTTTCAGCATTCAACAAGCCAA 2644849 37 97.3 36 ........................A............ TCTGCCCGATTGGATGCGTGAAAGTGTCCCGTGATT 2644922 37 97.3 35 .............................C....... AGCCTTGTTTAGAGGACAAGTCAATGGACTTGCCA 2644994 37 89.2 46 T....................A..A....C....... ACAATTAAAGTTGTCTCTTACGTCTTACCCGCAAGGGGAGGGTGGG 2645077 37 78.4 0 .....C..........CTT.A......A..CA..... | ========== ====== ====== ====== ===================================== ============================================== ================== 9 37 95.8 38 GTTTCTAAAGCCCTCCTGCTTGGTGGTGGGTTGAAAG # Left flank : TCTACCTGTGCGATCATCTAAGTGTTTGTAAGCAGTAATTGCTTGGGTAAGCTAATACTGCTGTTAGATGAGAAAGTACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTTCAAACAACCCAGAACCTTAGCTCTTGACATCAAACTCTTTTAGCTTGGTGTTAGGTGCCAGAGCGGCCTGTACTACTGAAATCTTAGATTTTGGTTTTACGAGGAGGATCATTACCTCTTACTTTACAACAAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACCGAACTACCACCCCCTAATTTTTATTTTTGGCAAGCTAAAGCGGGGTCAAAATCCCTGGAGTGCTGCCAAATGTCTAAAACTCTTGTCTACACTGGGTATTACTGTTTTAGTCATGAATAAAATTTTATTCATTGGCTGTAGAAAATAGGAATTGAAGAAGGTTTGCGAATTTTGCCTTCAAAAACCATTGTTGGCAGGGGCTTTCACGGGTAGG # Right flank : GTTTTTATCATTGAATATGCCACTTTGGCTATATAATTCTGTATTAGGGTGGTTTGAAAGGAGCGCTGCGATCGCACGTAAAACGCAGCTATATAGTAGCGGAGCCTCTGTTTGGGTGAAAACAGCAAAACGAGAGGTAGTAAATTTTTTTATTAGACTTGCAAATAAACGGCTTTAAAGCCACTCTTGTTATTCAAGAGCTTTGGGCTTGCTGTAATAAATTAAATTAGCAACCATATATTTAGCCGAGTTTTACAGGCTGATTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTGATTTAATTGCTGAAAGCCGCGAAACTACGTACCTTATGTCCCTGAACTTGGAAAAAATGGACAATAATTCTTTAAAAGTGACAATAATTATTTAATGGACACAAATGGAGAATAACGGATTTGAACCGATGGCCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGAGCTAATTCCCC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAAGCCCTCCTGCTTGGTGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //