Array 1 32029-30064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJP01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32028 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 31967 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31906 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31845 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31784 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31723 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31662 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31600 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31539 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31478 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31417 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31356 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31295 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31234 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31173 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31112 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31051 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30990 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30929 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30868 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30807 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30745 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30642 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30581 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30520 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30459 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30398 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30337 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30276 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30215 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30154 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30093 29 96.6 0 A............................ | A [30066] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2758-1448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJP01000400.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2757 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2696 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2635 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2574 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 2513 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2452 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2391 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2330 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2269 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2208 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2147 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2086 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2025 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1963 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1902 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1841 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1780 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1719 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1658 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1597 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1536 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1475 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //