Array 1 67025-64294 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRPL01000003.1 Parabacteroides merdae strain AF35-4AC AF35-4AC.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 67024 32 100.0 34 ................................ ATCGTGATGCTGCCGTCTTTAAACTCCAACAGGA 66958 32 100.0 35 ................................ TCTGACATTTTTTCAGATACGCCATAGGATTAAAA 66891 32 100.0 35 ................................ ATACCAAGGACGCTGATAACCGAACACGGTATCAA 66824 32 100.0 34 ................................ AGAAGAGATGCGCCACCAGTACCGGCGCCCAAAA 66758 32 100.0 35 ................................ AAGCTTCTAAAGCTCGTATCATGAAAGCGCGTAAG 66691 32 100.0 34 ................................ GGAAATCTGAGCCTTAAGGAGATTAACATGCTCG 66625 32 100.0 35 ................................ AACAGTTTGCGTGATAGGATTAACTATAATGTCAC 66558 32 100.0 34 ................................ TCCGCAACAAGGTATTGCTCCTCTTGTAGGTTTG 66492 32 100.0 33 ................................ AAGCTGCTAAGCGTCGTATTATGCAAGCTCGGC 66427 32 100.0 33 ................................ TAATTCAGAAAAAGCTAAGAAAATCAGATCAAT 66362 32 100.0 34 ................................ AAATTGTTGATTATGAAGAAAATTATCCTATTAA 66296 32 100.0 33 ................................ CCCCCTTGTTCAAAAAACTCGTTTCCGAAAGAC 66231 32 100.0 35 ................................ ATTTTGTACCGCCTCCAACCGCGGTGGCGGTATGT 66164 32 100.0 33 ................................ GTAAGGATCAGAGAAGTTTCGTGCTATTGCATT 66099 32 100.0 33 ................................ CGTCAGATTTGACCAAGGGCACGGCTACAAAGA 66034 32 100.0 33 ................................ TGATCGCTTAAAAGTGATCAGAAATCTCCGTGC 65969 32 100.0 34 ................................ GGGAAAACAAAGCGACATACCCAAAATTTGATTG 65903 32 100.0 33 ................................ TCCCCTCCGGATTTGGCCGCGGCCACAAGCCGG 65838 32 100.0 34 ................................ ATTTTTTGTGACTATGGCGTATATTTCACCATAC 65772 32 100.0 34 ................................ AAGTTGGCAAATGATCAGACTGAACAGCAAATAT 65706 32 100.0 33 ................................ CTACGGCATTACAAGGGAGAATGGGCAGGACAG 65641 32 100.0 32 ................................ TACGGCATTACAAGGGAGAATGGGCAGGACAG 65577 32 100.0 35 ................................ TTTGAATGCAAATTTGCAGTCAAATATTTTTCGGA 65510 32 100.0 34 ................................ AAATGGAATAATAACATTACAAGATAACCCAGAA 65444 32 100.0 34 ................................ AGCTTTCGTTTGGCATCAATTAAATCGTCTAAAG 65378 32 100.0 35 ................................ TCCCCGCTGATGCGGATCAGATCAAAAGTGATTTA 65311 32 100.0 33 ................................ AGGAGGAGTCTCAAAACTACGGAACATAATAAA 65246 32 100.0 34 ................................ TGAAAAAAACCATTGCCATCCACACCCGAAGATC 65180 32 100.0 34 ................................ TACTTACGACGGTACATCTTATACATACGAGGTC 65114 32 100.0 33 ................................ AGCAACAAATCAAAGAAGAACAAGACAAGAAAA 65049 32 100.0 34 ................................ TACATAGAAGCTACCGTCCAGCCAAAGATATTCT 64983 32 100.0 34 ................................ TGCTCATCATCTGTCGAGAAAAACTCAACAAATG 64917 32 100.0 34 ................................ CCGATTAGGGGAACTGGAACAAAAGTTAGATAAT 64851 32 100.0 33 ................................ ATATTTTCCATTTCGCGCACCTCGTTACGGGAT 64786 32 100.0 33 ................................ TACCATTCAATACAATTACTGTTTTGCGACATT 64721 32 100.0 35 ................................ CCCAGTTAAATGCATTGACTACAGCCCAAACGCAA 64654 32 100.0 35 ................................ CTATGAGGAAACATGGTGTATCTGGTGTTAAAAAG 64587 32 100.0 35 ................................ CGTTTGAAAAAATATATATTGGATGTAGCACAACA 64520 32 100.0 33 ................................ TGATAAGATTTTAGGACAGATACATTTTGATTG 64455 32 100.0 34 ................................ CCCCGACCAAGCATGGACAGTGGTAGGCAAAACC 64389 32 100.0 32 ................................ ATGACAACAAAAAAAGCCACCAATGAAACAAC 64325 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ =================================== ================== 42 32 99.6 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 74112-72705 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRPL01000003.1 Parabacteroides merdae strain AF35-4AC AF35-4AC.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 74111 32 100.0 34 ................................ TAAGGCTCGTATTTTAAAAGCTCGTAAACGTGAG 74045 32 100.0 34 ................................ GAAGTATCAGCCTTAATATTCTTTGTCTCAGCCA 73979 32 100.0 34 ................................ ATAAAACAATCACTCTAAACGGGGTACGACAACA 73913 32 100.0 33 ................................ AGTATTATCGGCAGAAATAAAGTCCATATAATC 73848 32 100.0 35 ................................ AGAAGAGATGCGCCACCAGTACCGGCGCCCAAAAG 73781 32 100.0 33 ................................ CAAAAAGAGCGGTACCGCCCTTAGCTTGAGTCA 73716 32 100.0 35 ................................ AGCTTGCGCCTTGGTTAACTGAACCTCTAAACCTG 73649 32 100.0 33 ................................ CATTTGAAGGCAACTTTAAATACTTATTCGAAG 73584 32 100.0 34 ................................ TAAGATATTCATACGGGAAAATAGTTGAATTATC 73518 32 100.0 32 ................................ TTCACCACCTCCCTTTCCAAAAGTACCATTAC 73454 32 100.0 33 ................................ CGATTATTCTAAACGAATCTTTTTTTACATCTG 73389 32 100.0 33 ................................ AGTTTTGCAAAATTTATCCGTGAAGCGTCCGGA 73324 32 100.0 32 ................................ TATTCGCCCATCCGTTAAGCGGTATGAGCAAG 73260 32 100.0 33 ................................ CAAAATATGAATCTACGGACCCGGAGTTTATGG 73195 32 100.0 35 ................................ GGCGAGGCTTTGGCGGGACGTTATATCGGTGCTCG 73128 32 100.0 33 ................................ ATGCGTTGGCAATGGTACTTTTGGAAGGGGAGG 73063 32 100.0 34 ................................ ATTAAAATACTCACGGGATTTTATCCAATTACCA 72997 32 100.0 33 ................................ AGGCTTAATGCGGACAGAACTATTAGGTGGTAC 72932 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 72868 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 72802 32 100.0 34 ................................ ACCGACAACTGCAAAGCCGGTGGCGCGGGAGGTT 72736 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 22 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //