Array 1 45024-43400 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMM01000017.1 Paenibacillus pasadenensis strain NBRC 101214 ppa01S_CON000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 45023 32 100.0 36 ................................ TCCCATCAAGACTCCCAGTATCTGAACGACCTCTAC 44955 32 100.0 34 ................................ GCAAAGTAGACGAGCTCGGGCGGGTAGTCCTGCC 44889 32 100.0 35 ................................ CTCGTAGCTGTTGCAGGTCGGGTTTTTGATCTGGC 44822 32 100.0 34 ................................ AAGGAGGGAGAGGGAGCATGAAGATTGAAGCCGG 44756 32 100.0 34 ................................ TCGATGAAGGAGATCCCGGAGGCGACCAGCGTGG 44690 32 100.0 35 ................................ TCGTATCAGGGGTTCAGCGGCTACGGCGGAGCGCG 44623 32 100.0 35 ................................ ATGAGAGGAGGTGAGAGCAGATGACTGCAATCAAA 44556 32 100.0 34 ................................ ACCAACTCGCTCGGCTTCGTCGTCTTCTTCGTTC 44490 32 100.0 35 ................................ CGTTTGGCGCTCCTTCGCGATGTTGTTCAGGTGAG 44423 32 96.9 35 ..................A............. TGTAAGGTTCTGTGAATTTCTTTACCTTTTGATCT 44356 32 96.9 37 ..................A............. TCGCCTAGCTCAATCAACCTTTTGGTGATTGTACCGC 44287 32 96.9 33 ..................A............. CACTCCGATTTCATATCTTCGAGTCGTGAAAAA 44222 32 96.9 34 ..................A............. AAGCGGAGCCGGTCGGACGTCGCCATTTTGATTA 44156 32 100.0 34 ................................ TCGTAGCGCCCAACCGTAAGTACCGCGTTATAAC 44090 32 100.0 33 ................................ GGATCTGATCGTCCAGGTCGTTGACGAGGTCCT 44025 32 100.0 34 ................................ CAGGCCGCCGCGCTTGTAGTGGTCGGGGCGTACG 43959 32 100.0 34 ................................ CACACGATATAGCCTCTCGACGAGGTGTTCGATT 43893 32 100.0 34 ................................ CGTACATGAGCGAATAGCAGACGCATTGCTTGAC 43827 32 100.0 35 ................................ GGCGGTTGGTAGGCCGGCCGGCTGCCGGGAGCCGC 43760 32 100.0 36 ................................ GCCCCGCTGATGCCGCCCATGATCGCCCCGATGCCC 43692 32 100.0 33 ................................ CGATAAGTGGGGAAGCCGCATACAGTTGCCCCG 43627 32 100.0 34 ................................ CATAGTGTTTTTCGTCGCCTCGAACTGCTTGCGC 43561 32 100.0 34 ................................ GGGTGCGTGAGCAATCGCGTCAGGACGGTGTTGG 43495 31 87.5 34 ...A............-...A..A........ GCGATTCGCGCGTCTCTGCCATCTGCTCCGCCGT 43430 31 71.9 0 ...C.......GCAT.......A-....G..G | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 97.9 34 GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Left flank : CGAAGGCATCGGCATGAGCGAGGAGCAGGCGCGCCGCATCTGGGAACGCTTCTACAAGAGCGACGAAGCCCGCGGCGGCCGCGGCGGCACCGGCATCGGGCTGTCGATCGTCAAGCATATCCTCGACGCGCACGGCTCGCGCATCGAGGTGCGGAGCGAGCCCGGCCAGGGCAGCGAGTTCCGCTTCTGCCTCGTGCGGGCGGGCTTGGCCGGTTCCGACGAGCAATACCGCGAGTCATCCGAGAAATAGGGATGACTCGCGGCTTTTTTGCATTGTTGGCGGCCGCGGGCTGGCAGCAGCCAGCCAGGCGGCAGGTGCAGCAGGTGCAGTGCGAATGCCAAGCTCCCATAAAATCTCCGGGAGATTCGCACCTCGAAAGTTGTCGAATCCCATCGAAAAAATGTTATCTTGATTTTTGTCAAGTCAAAACTTATGCTAAATTCAGAGCAACAGTAGAAGCTGGCACCCCCTTTCAAGGCTGGAAGCGCTGTTATTCGCT # Right flank : CCTATTTCCGTAGCCTTTGGAAAGGCGAGGGAATCTTTCCCTATTGGGAGCTTGAAAAACTAGGCGAGCGCTTCTCCTCACGAGAGATCATAAAAAACAGCTGATAAAAGCACAAAACCAACCCCCTCTGCGCGAGGCGGTTGGTTTTGTGCTTTTTCACAGGCAGTATTCCCCCGCCTTCGCCCTGGGAGGCATTTCAAGCCTCTTTCCAGACTCGTTTCGCCTGACCCTTCCTGTTCTATTCTATAATTCCCCTCTCATACTCTATAACGATGAGATGGAAGTAGAAGAAGACTCCGTCTACGGCGGGAAAGGGGACATGTGGAGATGCGGCAGGAAAGAGAGCGGGCGCGCTGGACTTGGGACGAAGCTGTCCAAAGGACAGAGGGGACCGAGCCGGAATCGGACCCGGTGATTGCGGCGAGAGATCGGTCTTTGCCGGCCGGCGAAAGCAGGAGCGAGGAAGTCCGGCAGACGAGAGATTCGCCGCGAGAAGCAAC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 35144-34098 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMM01000028.1 Paenibacillus pasadenensis strain NBRC 101214 ppa01S_CON000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 35143 32 100.0 40 ................................ AGCCTGGCGGCGGTTATGGTCGTTGATACGCTGAGCGGCA 35071 32 100.0 34 ................................ TGCTGATGGTCATGCCTCTGCTCATGATCTTCAT 35005 32 100.0 34 ................................ GGATTAGTCCATAATCAATCAGATATTTGCCGTC 34939 32 100.0 33 ................................ CATTTGACGAATAATGTCGTGTCCAGCAAGTGG 34874 32 100.0 35 ................................ CGCGAAGCGAACGGCCTGGACAGCGTCCTGACGCT 34807 32 100.0 35 ................................ TTGCCGAAAGTGATTTCAGAGTAGCACGCCGACGC 34740 32 100.0 34 ................................ TCGATCAGGTTGATCGCCCTCTCGACCTGTCCCT 34674 32 100.0 34 ................................ TGACTTTGCAGCTGCATTTGCCGCTCGTGCTGTT 34608 32 100.0 34 ................................ ATCCATGTCGTTTTGTCCATGAGAGCCAGAAGCT 34542 32 100.0 36 ................................ CAGACCTCGTACAGCGCAAGCAGCCCGGTAACGATC 34474 32 100.0 34 ................................ AGACCCCCTTTACGTTTGGGTGTGCACATGAGCC 34408 32 100.0 34 ................................ CGTCCACGTCAGCCGGATGCTCATGGCGTCATCC 34342 32 100.0 35 ................................ TGCGCGGTGCTCTCCCACTGCATGGCCTCGTAGTG 34275 32 93.8 37 ...................G.G.......... TACTCAAGGAGGATACCCATGAAAAAGACTGACATCC 34206 32 93.8 43 ..........A.....A............... AAAGCTCACTTGAAATTCCAAAGTTCCAAAATTCCAAAATAAA A,T [34180,34183] 34129 31 78.1 0 TA..........-.........AA.CC..... | A [34120] ========== ====== ====== ====== ================================ =========================================== ================== 16 32 97.9 36 GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Left flank : CTAGCTTTTCGGCGTAAAGCCTGACGGCCATGAGATGGTCGTGCACGCTCTCGCGGCGGCCGTCCGACTTCCGAATATGGGCGATGTACTCGGGAATAGGACTATTTTCTTGATCTCTCATTACCGCACCTCCTTAAAGGACTTTAGACCCAATACTAATAACCTATTCTAGTCGTATACTTCAACATAATCACACACAATCCTCCTTTTATCTTTTATTTTCCCAATTTTTCTTTATCCCTCCCCTATAGGGCATTTATTGAAATATGATCTTGCAGAAAAAGCTTGGCTCGATCGGAATCATTGCTTATGATGAGGACAAGAGCGGGAGTGCGAATGCCAAGCTCCCATGGAATCCCTGGGGGATTCGCACCTCGAAAATTGTCGAAATGAATGCCATTTCACCTTAATTAATGATTGTCAAGATCTTTCCTATGTCTAATCAGTATAGGAACTGGCTAGTTTATACCCCAAGGGGTATGGAAGCGTTATTTTTTGCT # Right flank : AACCAATATGACAACGCGAAGAAGCAGACTACGCAGGTCTCGCCTGAGGGCATCGGTTAACACAGAACTCCGCTGATGCCGGTCGCCGAACCACGGGCAGCTTCCCCCGTCACTCCCCGCCTTGGCTCTCATACTTGCTCCGCAGCCGCCGGACCGCGTCCATCAGCTCGCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAAGTCCATCCACTCGCGTCGCTCCGCCTCTCCCAGGTCGATGATGCTCATCAGGCGGCCGCTCCTCATTTCCGCCAGCTCCTTGCGGCTCATTTCCCGCGCACTCTCGTTGGCCCACCCGGTCGTCTCCCGCATCGCCTCTTGGATGATGCCCTGCACATCCGACGGCAGGCTTTCCCAGAACGAGAGGTTCATCACCACGGCGTACCCGAGGTACGCATGATTGCTGACCGTCATATAGTTTTGCACCTGATAGAACTTCTTGCTGTAAATATTCGTGATCGTGTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 44051-44553 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMM01000028.1 Paenibacillus pasadenensis strain NBRC 101214 ppa01S_CON000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 44051 32 100.0 34 ................................ AACTGCTCTCCCTCATCAACAAGACGGCGCGAAT 44117 32 100.0 34 ................................ TGCTGCAGGGGGAGGTCGGTATCGTAAAAGTCGA 44183 32 100.0 36 ................................ GATCCGGCGACAAACACTTACAAGGAAACGCCGCTG 44251 32 90.6 36 ..........T.A...A............... TGCAGCCGCTCGGCTCTTTTTTTCAACGTGAAGTAA 44319 32 93.8 37 ..........G.A................... GGATCCTGCAGCGTCATGATCTGCGGCAGCGCGCTTT 44388 32 90.6 36 ...A......G.........A........... AGGTGACGGTAGAAGTCAATGGCATGCGCCGCTGCC 44456 32 93.8 34 ..........G...........A......... GGTAGCCCGATCACATTCAAATGGTAGTCCCGCG 44522 31 78.1 0 CG........-.A...A....AC......... | T [44524] ========== ====== ====== ====== ================================ ===================================== ================== 8 32 93.4 35 GTCGCTCCCCACTGGGGAGCGTGGATTGAAAC # Left flank : AAGATCGTTCATCCTTATTTGAATGAATCCATCCCATGGGGGCTCGTGCCGCATGCTCAAGCGATGCTGCTGGCGCGGACCATTCGCGGCGATCTGGAAGAGTACCCGCCTTTTTTCTGGAAGTAGGAAGGAGAAGAGCGCTCGATGCTTGTTCTGATAACCTATGATGTGAGCACTACGACGAGCGATGGACGGAGGCGGCTGTCCAAGGTGGCGAAGACATGCCAGGATTACGGACAGCGGGTTCAGAACTCCGTATTTGAATGCGTTGTGGATGCTTCGCAATTCCGACGGCTGCGGTATGCTCTGGAGGAGCTGATTGATCCCGCTACGGACAGCTTGCGGTTTTATAACCTGGGTGATAGGTATAAGAGCAAGGTGGAGCATGTTGGAGCCAAGGCTTCCTATGACATGGATGGACCGCTGATTTTATGAGACGGAGCTGGTGCGAATGGCAAGCTCCCATGAAATCCCCGGGGGATTCGCGGAGGTTCGCCGCG # Right flank : CCGCTGTCCGACCGTTGTCGCTTTTTTACAATATCCTGCACGTTCCTTTCTCTATAATCGAGACTATCAGACGTCCAGCCGAGATCGCGATGGGCCGCGCTGCGGTGCCGCAACGGGGTTCCGGCCATCCGGCGTCGATCATAACGAGAGGTGGAATTAGGATGGACCATAATGTGAGCACCAGCGGCGCTACAGGCGAGCATACGACGAACGGGAGACCGCACGGCTACTCCGCCCTGACGCCGTTCATCGTCGTCAGCGATCCGGCCGAAGCCATTCGCTTCTACGAAGCTGTCTTCGGAGCCAAGACGAAAAGCGTGACGGATGTCGGCACCGACGGCAATTCGTTCATCGTGCACGCGGACATCGACTTCGGCAACGGGTACCTGCAGCTGGGAGCGGCCAATCCGGACTATCATCTCGTTCCGCCGCCCGGCGGAGGCGACGCCTGCTACTCGCTCGGCGTCTACGTCCCCGACGTCGACCGAGCTCTCGAGCTG # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 114484-111926 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMM01000007.1 Paenibacillus pasadenensis strain NBRC 101214 ppa01S_CON000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================== ================== 114483 32 100.0 36 ................................ CAGATTGGCTACAAGGGCTTGCTGGAGCTGGCCCGC 114415 32 100.0 38 ................................ CGGGATTACAAGGACTTTATCGAGGCAAACCGAGGCGA 114345 32 100.0 34 ................................ ACGCACGCCAGCAAAAGGGGCGGGGAAGACTCCC 114279 32 100.0 33 ................................ CTGGTCGCATCCGTCGCTGCATTCGTGCTGTTG 114214 32 100.0 34 ................................ GGCTCTGCCGAACGGTTACGCGGCAGCCACAGTC 114148 32 100.0 35 ................................ AGGCGGAAAAAGAGAACTCATGCTCCTGGTTGCCG 114081 32 100.0 34 ................................ TCCGCTGTGTCGATCATGCGCTGAATGCCGGCTG 114015 32 100.0 35 ................................ TCGAGGCACGCCGAGCATGATGATATCGCTAGGAT 113948 32 100.0 36 ................................ GAGAAGGCTTACGGCCATCAGATACCGCTCGTGAAG 113880 32 100.0 36 ................................ GGCCTCAATTACGGTCTGAACCAACTGCAAGAGTCC 113812 32 100.0 35 ................................ TCGTTGGATCGGGCTAACGACATCATGTGGCGGAT 113745 32 100.0 36 ................................ AGCGGCCTCGCCGATCCTCTTTATCTCTCCGTTTCG 113677 32 100.0 34 ................................ TCTGTCGGTTTTGAGGGATCGATATAATAGGGTT 113611 32 96.9 34 ........G....................... CGATTCGCAATACAAGCGGACACAAGGGTGTTTG 113545 32 100.0 35 ................................ GCCTTTCGGATCTTAAAAATCTCTCCGGTGACGCT 113478 32 100.0 35 ................................ GCCAGTTTGTTCGTCACATTATGGATTGGCGAGTA 113411 32 100.0 34 ................................ TGCCACGCTGGCGCTGCTCCTTCGCCCGGCGGAT 113345 32 96.9 35 .............A.................. TGTCGTCCGCCAAGAGTTCAGAAGCCCTTCCGATA 113278 32 100.0 34 ................................ AAGCCTTGCGCGAAATTGCGGAAGAGAAGAAAAA 113212 32 100.0 35 ................................ ATCATGGCGCGCGGTTTGAACGTGCCGGTCGGATC 113145 32 100.0 36 ................................ AGCGCCCGGATCCGCTTAGCGGCGCTGCCCAGCACC 113077 32 100.0 36 ................................ AATGACTGCTCCATCGGCCCGGAAGTGCTGCGCTTT 113009 32 100.0 83 ................................ CCGGGAAATTGTGAAATGGATATCGGACATGGGAGCGTGGATTGAAACGAACGAGCGCCGGCAGTATAACTCTACCGCCTCTG 112894 32 100.0 34 ................................ TTGTCGACGACAGGGTTGTACAAACTACCACAAT 112828 32 100.0 34 ................................ TCGTCGAGGTCAACGAGAAGGACGACCCGGAGCG 112762 32 100.0 34 ................................ CATGATCGCGGAGATCGAAAAGGATCTGCACAAA 112696 32 100.0 35 ................................ TCCCGCCGGTACTGCCGCCAGTATCCGAGGCGCTC 112629 32 96.9 34 ........G....................... TTCAGCGCTTCGTTGTCGCCGGCGGACCTCTTGA 112563 32 100.0 35 ................................ CGGGATCGGCCGGCCCCAGGCATCCACCCGGCCAG 112496 32 100.0 35 ................................ CATGCTATACTTGAAAAAGAAAGCAGGAATCAAGA 112429 32 100.0 34 ................................ TGCGAAACGAGCCGATGAGCAACGGGGCGTTTTA 112363 32 100.0 33 ................................ TCATTGGGTTTGACGCTGATGGTTACAGAGACT 112298 32 96.9 42 T............................... TACGTCCAGGTTGAACACGCTTAAAGCTCATGTGATCCCCTC 112224 32 96.9 33 .....C.......................... TATGTCGGGACTTCCAATACCGAAAAGCCCCCG 112159 32 100.0 35 ................................ GCCCCCCCAGCGCTTATCTTTGTGAAGGGCAGAAA 112092 32 100.0 36 ................................ TGCATGTCTGTAATTTGTGTCCGAACGATCGCGATG 112024 32 96.9 35 ..............................G. AGCTGCGCGCCGCTGCCCATCACTACGTTGCACAC 111957 32 87.5 0 ..............T.....A..AT....... | ========== ====== ====== ====== ================================ =================================================================================== ================== 38 32 99.2 36 GTCGCTCCCCGCAGGGGAGCGTGGATTGAAAC # Left flank : CGAGATCATCGGCATCACGATGCCGAACAGCGTCGAGCTCAAGGTCGCCGAGACCGAGCCGGGCGTCAAAGGCAACACGGCTCAAGGCGCGACGAAAAACGCGACGCTCGAGACCGGCTACACCGTCCAGGTGCCGCTGTTCATCAACGAAGGCGACCTGCTGCTGATCGATACGCGCGAAGGCCGCTACATCTCCCGCGCCTAGACGCTTGTCCGACCGTGCCGCTCCGCTTTGGCGGAGATCGGTTGTGGGATTTGCAAGGCCGTCCGGCTTGCCGGACGGCTTTTTTGTTATTTTGGCGGCCTCGAGCGGGAGCCTGTTGCGGCCGGTGCGAATGCCAAGCTCCCATGAATTCTCTAGTAGATTCGCACCTCGAAAATTGTCGAATTCGATCGAAAAATCGCAGTCTTGATTTTTGTCAAGTCTAAACTTATGCTTATTTTATAGTAGCAACAGTTGCCGAAATGACTTTTCAGCGCTGAAAGCGCTGTTATTTGCT # Right flank : ATCTACTCTGTAATGCGGGAGTGTGCTATAATCGATACTTGATTGCAACAGCTATAGGTGGGGAGTGAGACAGCGGTGTCGTTGATCGTAATGAAGTTCGGCGGCAGTTCGGTCGGCACGACGGAACGCATGCAGCGAGTAGCACAACGGATCGTGGAGAACAGGGATGCGGGCCATAAGGTCGTCGTGGTCGTATCGGCGATGGGAGATACGACGGACGATCTGATCGACCAGTCCAAACGGCTGAATCCGAATCCGCCGGCACGGGAGATGGACATGCTGCTGACGACGGGAGAGCAGATTTCGGTCGCTCTGCTGTCGATGACGATACATGCGATGGGCCGCAAGGCCGTATCGATGACGGGCTGGCAGGCAGGCATCCGCACGGAGCCGCTGCACGGCAAGGCGCGCATCACGGACATCCAGCCCGACCGCATCCACGCGGCGCTGGAGGAAGGCGGTATTGTGATCGTCGCGGGCTTCCAAGGGATGACGGAGCA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10606-7869 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMM01000078.1 Paenibacillus pasadenensis strain NBRC 101214 ppa01S_CON000078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 10605 33 100.0 35 ................................. GAGGCTCCCTGATGGATGCAAGGTTGATTGTGGAC 10537 33 100.0 32 ................................. GAAGAGCGCCCGGGTAACGGAGCACTGATGTG 10472 33 100.0 37 ................................. ATCGCCCGCATCGGACAGACTGGATTCGGAAAAGATC 10402 33 100.0 33 ................................. GCGCCAGCGGACAAGGACATCACCCACTATGCC 10336 33 100.0 33 ................................. CTCGTCGCATCCGTCGCTGCATTCGTGCTGTTG 10270 33 100.0 35 ................................. AGTGGCTGCTGACCGGATTGTACGCCATCTTTCGC 10202 33 100.0 34 ................................. ACCGATGACGAACGTGTGGTCATCTCGCTTCCCG 10135 33 100.0 35 ................................. AAGCTCAAATGCGTCTCATGCCTGACCTGATGCAC 10067 33 100.0 36 ................................. AGGATCTGTACAACAAGTTGCACGAAACCGGCCGTC 9998 33 100.0 33 ................................. AGCGAGCTTTGGTTGGCCAACGGAGCTAGAGGC 9932 33 100.0 34 ................................. ACTCCGCCGTCACGCCGGATCTGCTCGGCGGCGT 9865 33 100.0 35 ................................. GCGATAACGTCAACGCGAACACAAACTGGAAAGCC 9797 33 100.0 34 ................................. TCGTCCAGTGGGCCAACGAGTCGGCCAACGGCAC 9730 33 100.0 34 ................................. GTATTGCGCGTGCGGCCCCGCGTGAGGATCGCCT 9663 33 100.0 34 ................................. TTCTGCTGCGTCGTCCTCGACGACGACGTAGACC 9596 33 100.0 36 ................................. CGATAGGGGCGGAGGTCTTCCGGCCGGAGAGGCTGC 9527 33 100.0 33 ................................. ATGAGCGACGATGACTACTTATTTCGCAACATA 9461 33 100.0 34 ................................. CATACGTCAGGATGCGGTACAAAGCTATCCCACG 9394 33 100.0 35 ................................. AACGCTTATTCCGAATCGGTTACGACCGTGAAAAA 9326 33 100.0 36 ................................. ATCGATCGTGCTGCTTGCGGACATGCCGATAATAAT 9257 33 100.0 35 ................................. CCTTTCAGTCGGCGCCTTGTTGTCCCAACTCATCC 9189 33 100.0 34 ................................. ATGAAGTACGGGAAATGAAGACGATCCTGTACTC 9122 33 100.0 36 ................................. GGATTCGCATTCTTGTTCATGATAATGACCTTGATG 9053 33 100.0 35 ................................. TCGGGACCGGTCAGGCGGCGCTTGTTGCCCGTCTC 8985 33 100.0 37 ................................. CGATACCCTCCAGAGCCAATCCGTTACGACCCTTGCC 8915 33 100.0 34 ................................. GGACGGATAACGGTTATGGAACACCGCCTCGTCC 8848 33 100.0 35 ................................. CATGATGCGCCGGCATCAGCAGAAGGAGCGTCAAC 8780 33 100.0 37 ................................. CGCAAAATGAGGAGCTGATAGGGTATGGACGTGATCC 8710 33 100.0 34 ................................. GGGCTGGTTGATGGTGATGGTACGTCGTCCCACC 8643 33 100.0 33 ................................. AACCTTGAACGCCATCATCCATGTTGCGGTGTA 8577 33 100.0 33 ................................. TGTTATGTTCTGTTCTGTTACACAGGACATCCC 8511 33 100.0 34 ................................. ATCGCTCCGGCCGATCATCGACGACTACATACGC 8444 33 100.0 34 ................................. CTTAGCAGATGCCTTTCTCCCGGCTCCTTTACGC 8377 33 100.0 37 ................................. CCACTTCGCGACGCCTACCTCTTTGACCACTACGAAG 8307 33 100.0 33 ................................. GGTATTGGAAGTCCCGACGTAAAACAGCCCAAC 8241 33 100.0 35 ................................. ATGGCGTCCCGTTGCTCTGGATTTTCAAGCTCTCC TT [8214] 8171 33 100.0 33 ................................. CGCGTCAATCATCTCATTGGCAAACTGGTGTCG 8105 33 100.0 35 ................................. GCAATCAAGGCACGCACAAGATCGCCCGGGCCGGC 8037 33 90.9 34 ...........CA....A............... TTCGTAGACCATCGCCAGCACGTTTCCGATCATC 7970 33 93.9 36 ...........CA.................... GAGAACTCGACGCTGATCGGCATGTACTTCATCAAG 7901 33 81.8 0 ..T.........AC......TA...G....... | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.2 35 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Left flank : CGCCGCTCCGGCGCTCGTCGACGGCAAGACGTACGTGCCGCTGCAGTTCTTCCGCGACGTCATGATGCTGAACAACGCCTACGTGTTCGAAGGCCAGATCGACATCAACAACCAGGAGAAGATGGAGTAGGATCTATGGAATGAACGCAGGGCTGTTCCCGACGCCGTCTCACGGCGCGGGGGCAGCCCTGCTTGGCTTTCAGACGGCTTCGCGTGGAGGCAGGTTGGAGGCGATGGAAGCACGGCACTTCCGGCCCGATAAGGAAGACATTGGCAGCGTAATGAAGATCAAGTATGATTGAAAGTAGAGCGGATGCTTGGTGCGAATGCCAAGCTCCCATGAAAACCCCGGGGGATTCGCACCTCGAAATTTGTCGAATCGAACCTAAAATCATACTTTCTTGATTCCGTCAAGAATGTGGTCATACTTTTTAAGTTGATTGAAGTAGGAAAAGAGGATGGTTACATACCTGCAGGGTATGTAACCGCATTTTTTCGCT # Right flank : GGTTAGGAGGGCTCGGGGCCAGAAAGGGGCTTTGGGTTAATCCCCCCATGGACTAAACATGGCTACGTATGGCACAATAACATCCTAACGTCGCTCCCTACACGGGAAGCAGGAAGAAATGCCCGAGCTCAATCGATTAACGCCTGCCACACCTTGCCCTTCCCCGCACTCCCCCAATCCACGACAACGAGAAAAACAGGTAAACGCGACATGCTGCCGCGCTTACCTGTTTTGTATTCTTCCCGCAGCCAAAGCTTAATCCAAGTCAGCTAGGCAAGTGTCCGAGATTCCAACAAGAATTTTCCTCATGTCTATTCCGTCATCGCCTTCTCCCCATTGCTCCTTCGGAGAACATAAGAGTTGTACTCATCCTGCTCGATCTCCAGCCTGCCCTGAAAATCAAACCCGCATTTTTCGAGGACTCGATTGGACGGCAGGTTGCGGACAAGCGCGACCGCGCACAGAGCCTCGACATCGGCCTGATCAAACAAATAGCGTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //