Array 1 281905-282054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000003.1 Vibrio metschnikovii strain 2010V-1050 Contig3_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281905 28 100.0 33 ............................ CGTCCATCGTGTAATTGGCTGCTATCATAGTCT 281966 28 100.0 33 ............................ TCTTCTTTAGTCATGCTCTCGCAATCAAGCTCA 282027 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCGCTTACCCGAGATATGGCAGGCCACTATGACAAACATAAGGTCTCTGATGCGTTTCGAAAACGCGTTATCAGCATGAATCTGTTACAGCAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTGCCCCCAGCAGTTAGAGGGCGTATGAAGCTATGGTTTGTTGAACCTAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTCGTCGACTACTTAATGCAGCATTGCCCAGCGGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGAACCACCCGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGATTTCTGGATTACAATTGATAGTCGAAACCCTTATTTCGTCAAAATAGCAATATATGGGTTTATTTTTGCGATCTTTAACAATATATTGGT # Right flank : CCTTTCTTCGGCGTTCCTACTTACTTTTATCGCTGTCTTCTGTCACCGATTATGCAAAACTGATCCACTTAATACTCTCAGTCCGCATGGATTCCCGCCTGCGCGGGGATGACGGTTTGGCTATTGTATGGGTGGTCAATTCGATACTCATCTTGCCAGGCTGTGCCTGTCATAGCTCTTCGTTAATCGGGGCAATACAATATTTTGCGCAGATTCGACAAGAAAATGTGAGTAAAGTAACAATATGCGTCTTTCATTCATTAGACACTATTAACCATAAACTTTGTGATTGGTTGAATCTATGAAAACGTTAACTTTACCTTGTCAGCGAGACGTTGAAATAAACGCCGCAGAGCTAAACGTCACCCTTAAAGGTCATGAGCTGCATTTTTCTTATCAAGGTGACCCATCAAAACCGATCAATGATCGTTTTATTCTTGCTCGTAGTTTACTCGAAATGGATGCTAATGCGCTTGTTGTTGGCGATGGCTTTCAAATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 563967-563759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000003.1 Vibrio metschnikovii strain 2010V-1050 Contig3_2010V-1050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 563966 28 100.0 32 ............................ ATATCAAGGGCAACATATGGGGCGGCTTGCAT 563906 28 100.0 32 ............................ TTTTACCGGCATCATTGATGCATTCCGCAAAG 563846 28 100.0 32 ............................ TTGACGTGATATCCACAAGGCCAGTAGGTCAT 563786 28 78.6 0 .....................A.GACGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGAAATTTAAGTAGTGCAAAGCTGCGGCGTTTAATTGCGCGAGGGAGTATCAATAAAGAAGGTGAGCTGCGCTATAAAGAGAAGATGCTGAGCCAGAGTATTAACGCACCTTATCTTGATTTACAGAGTGGCTCTACAGGGCAAACGTATCGTAAATTTTTTGAGTTTGGTGAAATGCAGTCAATACCAACATCCGGAAAGTTTGATTCCTATGGGTTAAGTCAGTCAGCTACCGTTCCTTGGTTTTAACCCTATTTTTTTTTGCTCTTTAAAAATAACCTTTAAATACAAATAGTTACAGCATGTGATTTAAAATAGGGTAAAAATGGTTTTTTTACTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : AGGCTTTTTTTGTAACTTGTCAGGTAATGCTTTCAGGTCACATTGGCTTGGTAAGGTGTTAGTAGTAACCATTATCACGAAGAGGGACTTCGAGAGTATTATCACCTGGTCGAGTTGGGGTGCCAATCATCTCATCATAAGGACTTTGATGGCGTAGCACTTGCTGCTGTGTATTCAGCTTTCTGCAACGTTTTTGCATTTCTACGATAGAGTGGGTCTTTAAGAGATTATCGTTGTTATCGACTACCCAATACTCTTGGCCATCAATAATTACTGACGCTTGATAAAGCGCCATATCTAATGCGTGAATAATTAACTTATTGATATAAAAGTACTGTTCTAGCGTAGTCAGTGTTTGTCTCATGATTCCTCCTTGATTATTAACCAATACGTTGGCTTATTAAGAGGCGATCACTCAACGTTATATCCCCTTCGTACTTGAAGCTGCAGCGGTGTTGGCTAGGTTCATTCACTCCAATCACATCGTCTGTCTATGCTTA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 572249-571981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000003.1 Vibrio metschnikovii strain 2010V-1050 Contig3_2010V-1050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 572248 28 100.0 32 ............................ TTGATGATATTGCTAAGGCTTCCGTTGTAATA 572188 28 100.0 32 ............................ GTGTTATAGATTTTTCAAAACTGGCCGGAAAA 572128 28 100.0 32 ............................ TTTCTGCGGTTACCGCTTGATCTGTCTTTATG 572068 28 100.0 32 ............................ TAGAGCCGAGCGATTTTTATTACAGGCAGCAC 572008 28 82.1 0 .......................CATTG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACATAAGCCAATGATCACTGACGTTTCATTGTTCACAACGCTTTCCTCTTAAAATTGGGGCGAGAAGTATAGCGCCAAAATCTATCATGAGAAGGAAAAGTATCCATTGAGGGTGAAGTGGCAGAGCCATCTTGCCGATTTTGCCATCCACACTGATGATAGTCGTAATGTTATGGCGAGTGACTCTACAGGACAAACGTATCGTAACTTCTTTGAATTTGGTGAAATGCAGCCACTGCGAGTACCCGGAAAGTTTGATTCCTATGGGTTAAGTCAGTCAGCTACCGTTCCTTGGTTTTAATGTCGTCGAGGGAAGCTTTCGTTAAATTTATTTTTACTACTTTAAAAAAGGCATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATGAGTTACAATGAGTTACAATGGGTGTTTTTTAATAAGGTAAAAATGCAATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : TTGTCACTGTAAAAGTCATAATTATTTATTTTTTGATATGCAATAGGTTATTGATAAGTGTCGATTCTTTATTGCATTAATCAATGTTACGTTCGGTATAAGGTTGGCTAAAGGGTATAAATCCTCACCTTTGGTTGTTAATTTAGCGAATGGAACTGTGGAATGCGAAGACAGAACAACACTATTGATCTGCAAAAATTGAAAGAAGAACTCGATGATTTAAATAATAAGATTAACGATAAATGGGAAAGCTATTCATGCACTTTAGTTACACCTATGTACGGTGGGGGTGTTAAAGAGGGGAAAGTCGATACTGCCATGCCGATTCGCGCCAGTGCTATTCGTGGGCAACTGCGTTTTTGGTGGCGCATTGCTTGTGGGCCGAAAGACCCTAAAGAGCTCTTTGAAAAAGAGACTGAGATTTGGGGTGGGATTGGCGGCGATGGTGCTACGGCCAGTCAAGTCGAGATTCGGGTTCAATCAAAGCCAGCATTAGATAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 120691-121198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000001.1 Vibrio metschnikovii strain 2010V-1050 Contig1_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120691 28 100.0 32 ............................ TTCTTCATTCATCTTCATTACTCCAAAGTAAA 120751 28 100.0 32 ............................ TTGGTGATGTAGATAGGACGTTTTACGTTTTC 120811 28 100.0 32 ............................ CGCTACGCTGGGATAATCTAACGGATGAGAAA 120871 28 100.0 32 ............................ TAAGAACGCAAGTGCTTTAGCTTCATGGGCAT 120931 28 100.0 32 ............................ AGTCTGTCGATTAGGTCATAGAATTCATCCGG 120991 28 100.0 32 ............................ AGCTTATCATAAAGCCGATTATCTTTCCCTTC 121051 28 100.0 32 ............................ TTTATCACAAATTGATATATTCGATGATGATT 121111 28 100.0 32 ............................ TTTGACGCAAACTCGGCTTGAATTTCACCAAG 121171 28 82.1 0 .......................CATTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGTTGAGCAGAGTACCGATTGAGTTTGTATTGCGGGAGGTCATTGCTTGAATAACTACCCAGTAAAATGTGATGTTGTATTGTATGGGAATGCTTTTTCTTTTTTAATATACCCATCAATATGATATTATGTGCGTATTGGTTGTTAAAAGGCGCTGTAGAGCATGTCTATCTAATTACAAATACAAGAAATTCTATGCTCAATGTTAATCCATCAAAGCGTGGCAGTAAAAGATAAAGCTAACAGTTCAGGAGGGAGAGTCAACGCGTGGTATTTTTATTATGCGTTGATTTTTTTTGTGATCACGGTTGCATCGGTATTCCGTTGTTCGTTCTTTAAAAAACAGCGTGAATTGATAATAAAATTACCCCTCTTTTTTTGTTTGAATTTAAGCTGTTGATTTATATAAGTAATAAATCGGATAAAAAATAAAGGGTTATTTTGATAAATTTGATGTAATTATCATTATTAACAATAAGTTACTGTTATAGTTTCATA # Right flank : GTCACTGTAAAAGTCATAATTATTTATTTTTTGATATGCAACAGGTTATTGATAAGTGTCGATTCTTTATTGCATTAATCAATGTTACGTTCGGTATAAGGTTGGCTAAAGGGTATAAATCCTCACCTTTGGTTTTTTATTCAGCAGAATGGAACTGTGGAATGCGAAGACAGAACAACACAATTGATCTGCAAAGATTGAAAGAAGAACTCGATGATTTAAATGAATGGGAAAGCTATTCATGCACTTTAGTTACACCTATGTACGGTGGGGGTGTTAAAGAGGGGAAAGTCGATACTGCCATGCCGATTCGCGCCAGTGCTATTCGTGGACAACTGCGTTTTTGGTGGCGCATTGCCTGTGGGGCGAAAGATCCTGAGGTCATGCGAGAAAATGAAGAAGCCATATGGGGTGGGATTAGCGATAAGGCTAAAGTGAGCCAAGTTCAAGTTCGAGTGAAATGTAAAAATGTAAGTATGAGCTACTTGGTTAGCTCGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 129447-129775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000001.1 Vibrio metschnikovii strain 2010V-1050 Contig1_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 129447 28 100.0 33 ............................ TGATTCATTTAATATAGAGATAAGATAATGGAA 129508 28 100.0 32 ............................ ATGCCCCGCGCATCCAACGCGCTGAATTGAAA 129568 28 100.0 32 ............................ ATTATCTCTTGATCTACGTTATAAATCTGTAC 129628 28 100.0 32 ............................ CCTAACCTTTTCTTCCATCATTTCCGCTGATT 129688 28 100.0 32 ............................ AGATACTGAGAAGGTTTTACCCGTCGATAGGA 129748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAAATCAGTGAAGTGCTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGTTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCTGCGCTATAAAGAGAAGATGCTGAGCCAGAGTATTAACGCACCTTATCTTGATTTACAGAGTGGCTCTACAGGGCAAACGTATCGTAAATTTTTTGAGTTTGGTGAAATGCAGTCAATACCAACATCCGGAAAGTTTGATTCCTATGGGTTAAGTCAGTCAGCTACCGTTCCTTGGTTTTAATGTCATCGAGGGGAGCTTTCGTTAAATTTATTTTTACTACTTAAAAAAGGCATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATGAGTTACAATATGTGTTTTTTAATAAGGTAAAAATGCAATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : ATTGCAGCTGATTGGGCTTGGTTGGATGAATAAAAACAAACTTTTATTGTATTGAAAGCCGTCATTGACTGAACCCAAAAATCAGGCAAAATGTTTACAAGATGCACAACCTCGCCCACTCGGCGGGGTTTTTTTATGCCTGTCATTTGGGGGTGACAATGTCACTAGATAAAGCCACGATTGCTATCGCCACTGGCACTGGAACGACGGTCGGAGTCAGTGCTGCTAAATCTGCGCAAAGTGCGCAATCTTTGTTAAATTCCAGTATTTCACAGATATTAGCGGGTGATTACACACTCTACGGCTCTGATATCGCTACGATAGCCGGTATCGTCATGGGCGCTCTCGGTATTGTGGTTACGCTCTATCGTATCCGCGTCACTAAGCGACTCGCCAATGCGTTATAACAAGCTGACTACGGCGTTAATCGCAGCTGCTATCGGTATAACGGGCGGTTTTGAGGGTTACAACCGCATCGCATACCAAGATAGCGGGGGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 178703-178850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000001.1 Vibrio metschnikovii strain 2010V-1050 Contig1_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178703 28 100.0 32 ............................ TCATTAGTCTTTTGCACTCCGGTGGTATCTCT 178763 28 100.0 32 ............................ ATCCTGACCGCGCCCTAAAAATAATTTATTCA 178823 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGATTTACTTGTTCAGTTAGCCATGCGTCATGAGATAATGCTTTGCGTTGTTGTTCTGCCAATTGTTCAGTAAGTTCACGACAAGCATCGCTAAGAGTTCGGCCTTGGCTTTCAGCCATTTGCTGAGCTAAGCGTTTTATTTCTTCGTCTACACGAAATTGAATTCTGGTATCCATGATTAGCTCCTTGGTTGTGCACACAGATGTTAGCACTGATGTTGTGAGAGGGCAACTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGAGCAATGCGGAAGGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATCAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTAATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAGCCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTTAGTCTGATTTAGACGTTTTTGTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTTGGTGGCGATTGAAAGTTGAACGATGCTTGTGTTTTGTCGGTCAACTCTGCTCTGATAAATTGTGTACGCAAAAGGTTCGATTGTCGCTGAAAGGTCTCTTTCTTTGTTGTTGCTTGTCCATTGATTCCATCGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAACATCTTGCTTGCTGACAGTGTTTGGTTAGCGCAAGTTTATCGATGATTGTGCGCTTTTTTCCGGC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 187679-187887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000001.1 Vibrio metschnikovii strain 2010V-1050 Contig1_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187679 28 100.0 32 ............................ CGACACTCATTTAACCCACTAGATCCCGCCTT 187739 28 100.0 32 ............................ TTAACAAATATTAATGGGTGCTGCGCTTGTCG 187799 28 100.0 33 ............................ TATCGACCGTAATGAAATCAAAGAAGCTATAAT 187860 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGACTGATCTATTATACTTTTACTCAGACACTTATTATGGGCGGAGCGGTTGTTGTCGGTAGGTTTTTGGGTGTGGCTTTCTTCACCAATCAGAGTCAATGGGACGAGTTTTTCACTGGTCTACCTATATTGGCAATAATTTTTTTTGGTATTGGTATTCCGTTTAATGCTATAGCTTGGTTTATTGGTGAAAAACGATATCAAAACCTTTTAAATGAGCGGAAAAACACATAACAAGGCGTTAAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATCAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTCATGTATTGATTTTATTGGTTTTTAGTGCAATGCGGTTAGTCGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCATTTTTTGAGAAAAGAGGAACTATGGTTGTTGAAGTCAGGCGAGCAGAGCCATCAGATGCTAAAGCGATAAAAGGAATTTATGAGTGCCCAAATGCTTACACTGGCACATTACAAATTCCGCTTCCATCCTCAGATATGTGGGAAAAACGTTTCCAGACTATTCCAGAGCATGTTTATGCGTATGTGGCAGTAGTGGACGGTGAAGTAGTAGGTAATTTAGGCTTTGAGCTATGTACCAATCCGCGACGCCGTCACGTTGGTACATTCGGTATGGGCGTCAAAGACGATGTTCAAGGTTTAGGTGTTGGTAGTGCTTTACTGAAAACGGTTATCGATTTAGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 204590-204736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGLY010000001.1 Vibrio metschnikovii strain 2010V-1050 Contig1_2010V-1050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 204590 28 100.0 32 ............................ TGACAGGACACGAATAGCCAGGCGAATAAATG 204650 28 100.0 31 ............................ GCTAACGATTCAGCAAAATAAGCGATTTTTT 204709 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTTTGCTCTGATAAATTGTATGCGTAAAAGGTTCGATTGTTGCTGAAAGGTCTCTTCCTTTGATGTTGTTTGCTCCTTGATTCCACAGGCTAATTAGCTTCACCTTATTTGGGATCTTATCGGTAACAATGCTTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTGGCTTTAACTAATGAACATTGTAAAAGTTCAATGTAATCAATAGGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACGGTGTTATGCGGAAATTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGAATTTATTAGTTTTTAGTGCAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCTTTATTGAGCCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTTAGTCTGATTTAGAAGTTTTCCTATTCTAATTCATTGATATTATAAGTTTATTGTTCTTTTTCGTGGCGATTGAAAGTTGAACGATACTTGTGCTTTTTCGGTAACTTTGCCCTGATAAATTGTGCTCGCAAAAGGTTCGATTTTTGCTGAAAGATCTCTTTCTTTGGTGTTGCTTGCTCATTGATTCCACCGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAATATCTTACTTGCTGACAGTGTTTGGTTAGCGCAAGTTTATCGGCGAATGTGCGTTTTTGTCCGGCT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //