Array 1 540-1610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFN010000019.1 Clostridium tertium strain 1001275B_160808_H2 NODE_19_length_62413_cov_4.80188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 540 30 100.0 35 .............................. CCTGTATATTCCAAAACAGCTTTAGCAGTAAGTCC 605 30 100.0 35 .............................. TTATAATCTCCTTTCGAAAAATGTTGCACTTTTTA 670 30 100.0 34 .............................. GTTGATGAAGTTTTATCAGGAAGTGATTTTGCAA 734 30 100.0 36 .............................. CAAGCTGAAGTTGAAGCTAATGCTCAAGGCAAATCA 800 30 100.0 35 .............................. CTTAATAGAGTTGTAACTAATATAACTAACTTACT 865 30 100.0 36 .............................. ACTATAAGATATTCTGTTTCAGTACCAGCACCAGTT 931 30 100.0 36 .............................. CTATATCTAATTTTTTATAATAAATCTTTAACTTCG 997 30 100.0 35 .............................. AAATCTTTAAGAACTACATCAAAAACAACATAACC 1062 30 100.0 36 .............................. AAATTGAATTGTAAGAATTTACAAGTAAGTGTTATA 1128 30 100.0 36 .............................. TTTAATACACATAATGCAACTGATAAATCTTGATTA 1194 30 100.0 35 .............................. TCTCCTTTCTAAATTAAATTTAATATAATTTCATC 1259 30 100.0 35 .............................. GTAAATCCAATATCTGTGTAATCTCCATCACGTGT 1324 30 100.0 36 .............................. GCGGTACGTCTGTGATCCTTTATCACGGTTTTACCA 1390 30 100.0 37 .............................. ATTTAGAGACGGAGATAAAAAAGTCGAAGTCTCCGGT 1457 30 96.7 35 ...............G.............. TAGATGTTAGGAGGAATAAAAAGTATGGAGTTAAG 1522 30 86.7 28 ...............GG......G....C. CCTGTTATTTATATGCCTTTCACATCCC 1580 30 76.7 0 C....GG.....G..T...........T.G | A [1582] ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.7 35 GATTAACATTAACATCAGATGTATTTAAAT # Left flank : TAAGGGTGAAAATATTATAATAGGGATACATGGAAATATTATTATTCTTATAATGAATTACTATGACAAAAAATATAATTATGATTTTTAGAAAAATTTAAGTATGCCAGATATTTATAAATTGACTTTTCAATATGAAAAGCTCTCGAGTGTTGATCATATTTGGCATTAAATTATAAAATACAATAGAAGTACTTGCTTGATTAACGATGATAAAATATAAATTTAATTTTTCTAATAAATAGATTTATCTTAATATTATAAAGGGGGTCGCGTCACGCGACGTCCTTTATTTTATGGGAATTATAAAAAATATATTAAAAATTTTTACCAAGCTATTATTTTATAAAGTATTTAGAAAATAAGTTATATTGCCAGTTTAGGCTATAAATTATATAAAGCTTTTTTTATTTAAGTAAAGCTGGTAAAAAGTTTGAAAAGTGAGATGTTTACAAAGGTTTTATAGGCATGTATAATTTAAGAAAGGCTTAAAATCAATG # Right flank : GATAGTCTTAACGGCAGCTATAATCATCATTATTAATATTTAAAACATAAGATTCGAATATGAAATATAATTAATAATTTAAAATGTTAGAATTTGAATAATAGATATATAAAGCACCTGTAATTAATAATTATGGGGGCTTTTAATTATTTTATTATATTTTTATATTATTTAAAATATATGACGAAAATATTAATAATGATGAATAAGGAGAATATCTATGAAAGTGAAAAAGAGATATAAAGAAAAAGATAAAATAAATAGAGAATTAACTGTAGTTAACATAATAAATAATTATAATAAAGTCAAAATGAAAAGTGAAATGAAATAAAATAACTAAAAGATAAATTATAATTTAGTTAATAGTAACATTTTATGTTTTTAAATTATATTTTAAAAAATATTAATTATTAACCTTAACATAGTTCTACATAATTGTTAATATTTACAATTATGTAGAATGGATGTACAATTATTTTAGGAGGTGATGACATGAAAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATCAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 10835-11973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFN010000019.1 Clostridium tertium strain 1001275B_160808_H2 NODE_19_length_62413_cov_4.80188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 10835 30 100.0 36 .............................. AGTTGAAACTTTTAAAGAAATACCTGGTTTATATAA 10901 30 100.0 35 .............................. TCATGTCCTAGTATTTGCTGTATTACTTCTGGTTT 10966 30 100.0 36 .............................. CAATTATTTAGATGTAGAATTAAATCCCACAGAGAA 11032 30 100.0 35 .............................. AGGATTTGCTATTGCTATTGCTACATATGTAATAG 11097 30 100.0 36 .............................. GAAAATTATAATTGGGATAATATGAATCAAGGTTTA 11163 30 100.0 36 .............................. AAAAAATAGTTTTGTATTTTCATGGTGTCCAACTAT 11229 30 100.0 35 .............................. AAGAAAATCAAATTTAGTATTTAATATTGATAAAA 11294 30 100.0 34 .............................. ATATAGAATGTGTTTAAAAAAAGGTCAACTTTAT 11358 30 100.0 34 .............................. TTTTGCAACCACTTAAAGAACAATTTAATGGGTG 11422 30 100.0 36 .............................. ACAACTGCCCAACCCATATGAGCAACTAACCAAAAT 11488 30 100.0 36 .............................. CATTGTAAATCAAATAGCTCTCCAAATCCTTGTCTA 11554 30 100.0 35 .............................. ATATGTAGTCTTAGGCTCAACAAAAAAACAACAAC 11619 30 100.0 35 .............................. TAAATTACATATTCACCGCTTGTATAATTTCCTTG 11684 30 100.0 35 .............................. ATAATTCTATCTATATCCTTTAGCCTTAAATCTAA 11749 30 100.0 34 .............................. GTATATTTAGAAGCTTTCTCCCAATCACTAGCAA 11813 30 96.7 35 ............T................. ATTTGTAGGAGGTAGAAGTAAGTGATAAATAAATT 11878 30 100.0 36 .............................. GCGGTACGTCTGTGATCCTTTATCACGGTTTTACCA 11944 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.8 35 GATTAACATTAACATCAGATGTATTTAAAT # Left flank : ATTTATCCCCTTTAGTTTAAAGGATGGTATGTAGCATGGGTAAAAATATCAACTATAACTATGCTTTTTTATTTTATGATATAAAAGAAGAGAGAGTTCAAAAAGTTTTTAAAGTATGTAAAAAGTATCTGTCACATTTTCAAAAATCAGTGTTTAGAGGAGAAATAACACCATCAAAACTTATATTATTAAAGAAAGATTTGAATAAGGTTATCGATAAAACAGAAGATTTCATTTGCATAGTAAAACTTATTAATGGAGACGTATTTGGTGAAGAAATACTAGGAGTTCAAAGTAATAATACTGGTGAAGATTTAATAATATAATTTACCAGGCGGTATTTCTATTAAAATCTTTATAAGCGTTAAAAATACAGGCTTTCATGGGTTTTCAAAATAAGTTTGTATTTTTTTACATTAGCTTGGTAAATTATTGAGAAAAGTAAGAGGAAATAAGGTTTTTAACAAATTTTATTAAATAGAAAAGTCACATTTTCTAAG # Right flank : TAATATATTTAAATTTGTAAATATAAAGAATCAAGAACCAAGTATTTAGGTAGCCCCCTAAAATCACAATATATATTACATTATTTTTTAGATGATATTTAAAAAAATTTTGATAAGTAAAATAATTAAAATCTAAATAATAAAAAAGTGATGGGATGTTGTTATATAGAGTTATTAAAAAGTACATTTAATAAAGATTTTATTAAGGATTTTCAAATTAATTGTTTTAGAGACGAGTTTTTCATAATTTATAAAAAAATAATTAAATATTTATTGTAATCGAACTCAATAGATTGACAAGAATGCTAAATAGTTTTATAATTAGTTAGAAGTCTAACAAAAGCGTGGGTGTAATTAATGAGTGAAATAAAACACATTGGAAGAAAAATTAATATACTGTCTCATAAAATTAAGAGAAGAATAGGTAAAGTATCATTAGAATATGGGATAAGCAGTATGCAAGCAAAAATTCTAGGGTATATATTTCATCAAGCACCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATCAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //