Array 1 32429-30464 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVY01000041.1 Salmonella enterica isolate STY18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32428 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32367 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32306 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 32245 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 32184 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 32123 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 32062 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 32000 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31939 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31878 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31817 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31756 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31695 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31634 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31573 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31512 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31451 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31390 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31329 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31268 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31207 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 31145 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31042 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30981 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30920 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30859 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30798 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30737 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30676 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30615 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30554 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30493 29 96.6 0 A............................ | A [30466] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5367-6859 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVY01000106.1 Salmonella enterica isolate STY18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5367 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5428 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5489 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5550 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5611 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5672 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5733 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5794 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5855 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5916 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5977 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6038 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6099 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6160 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6221 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6282 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6344 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6405 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6466 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6527 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6588 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6649 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6710 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6771 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6832 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //