Array 1 44648-48202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH417599.1 Anaeroglobus geminatus F0357 Scfld51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44648 28 100.0 33 ............................ CCTGTACCCTTATAGGTTAGGAGGTGAGAGCGA 44709 28 100.0 32 ............................ TTATGCTTTTCATGTTTTTTAATAACGTCGTC 44769 28 100.0 32 ............................ GAATGGGCGGAGGATCTCATCATAAAAGAATT 44829 28 100.0 32 ............................ TTGAGGTCGCCCACTTCCAGATCCTGGAAGTC 44889 28 100.0 33 ............................ CAGCGCCGGCTTACCTGCTCGGTACCGAGATAC 44950 28 100.0 32 ............................ AGTCGGCGGCGTGAGCCATATCCTCATCGCCG 45010 28 100.0 32 ............................ TACATCACCGCGCGCGGTTGCCGCAACACGTC 45070 28 100.0 32 ............................ TGAATAAACTCGTCCCGCTTGGTCATCCTTGT 45130 28 100.0 32 ............................ TTGATAAGATGGCGTTACATGGCAAGGAGGTA 45190 28 100.0 32 ............................ AAAGAAAAAACCGGGGCGAAAAAGAAAAAAAA 45250 28 100.0 32 ............................ TTCGGCCAATCTGTTACTTTTATGACCTATTA 45310 28 100.0 32 ............................ ATTGACGGGAATATGCCAAACGACAACCAATA 45370 28 100.0 32 ............................ TTTAATGTTGACAAGGAAAGGGCCACAGCAGA 45430 28 100.0 32 ............................ GCCATGCCCGATGAATCCATCGCTGGTCTTAT 45490 28 100.0 32 ............................ TGATATCCAAATACTTCATTATCCTTTTCAGT 45550 28 100.0 32 ............................ TTGACAGCTTGGCGCTTGGACGGCGGCATCGT 45610 28 100.0 32 ............................ TGGCATTGGCCTACAGTGGATTTCTCGTTATC 45670 28 100.0 32 ............................ TATATTACGTATTTGCGCTTCCGAAAGCGCTT 45730 28 100.0 32 ............................ AAACTGGCAACCTCGACGCTAATACTACTCTA 45790 28 100.0 32 ............................ ATCATCAACACCGCATCACATGCCCGCTCCAA 45850 28 100.0 32 ............................ TTCAGTGCCGGACATAACTTGCTGTGCATTCA 45910 28 100.0 32 ............................ AGTAGAATCTTTTTCGCCATATTCAAAGTTTT 45970 28 100.0 32 ............................ CAATACATCAGAAAGAACACTGGAAGCTGTAT 46030 28 100.0 32 ............................ TATATAAAGACGGCCTAAAGCTCTGCCTGGAG 46090 28 100.0 33 ............................ GTGCGGCATATACAAGAGCGACGAAGAGACCAA 46151 28 100.0 32 ............................ AAGTGGTAATTCAACACCTGCGCCCTTCTGCG 46211 28 100.0 32 ............................ AATTATTGTTAATCCCGTTATGCAGACGTCAG 46271 28 100.0 32 ............................ GATAAAGTACTGGCCGAAACGCAAGCAACGCG 46331 28 100.0 32 ............................ ATATCATCAATGATTCTATCAATTGTCTCCTT 46391 28 100.0 32 ............................ TCGTTGCTTAAATCCCCGCCGAAAAATCCAAA 46451 28 100.0 32 ............................ CAGCACAGTAAGTACTCGGTGCCGTTTTTGTC 46511 28 100.0 32 ............................ TTGCTGATATGACAAATCAGTCCTTACATTTA 46571 28 100.0 32 ............................ AGAATACTCCAATCGTCCCGGTGCTCGATAAC 46631 28 100.0 32 ............................ TGTGGCGTCTTATCCGACGTTGCAGACGTTTG 46691 28 96.4 14 ...........................N NNNNNNNNNGTTTG Deletion [46733] 46733 28 100.0 32 ............................ ATCTTGGCGAGCAAGTTGTGCAAAATCAGGAA 46793 28 100.0 32 ............................ GCGCCGGTAACAGCAGCGGCCGCCCCGATAGA 46853 28 100.0 32 ............................ GGGATATACTTCATCGATATAAAAAGGAATTA 46913 28 100.0 32 ............................ TACGGAAGCATTAGTGGCCGTCGCCGTAGGCA 46973 28 100.0 32 ............................ GTAAAACTCTGCGAAAAACCATGAGAGCGACT 47033 28 100.0 32 ............................ ATTATCGGCACGCCGCCTATTTGGTCTCTTTT 47093 28 100.0 32 ............................ TTTAAGACGATGCCTGAGGCGGTAAAGAATGC 47153 28 100.0 32 ............................ ATATCAAACGGCCAATCATTCTTGTAGTAGTC 47213 28 100.0 32 ............................ AATATCGATAATTCTTCGTTAATATACGCCCA 47273 28 100.0 32 ............................ TAAACCCACGTTCGTACTCATGATAACCTGGC 47333 28 100.0 33 ............................ TTGTTGCCAGTACCCCTGTCGGTTTTACGTTTG 47394 28 100.0 32 ............................ AAACGCTTGGCAGAAGATGTTGTATGGTTGGT 47454 28 100.0 33 ............................ ACGCACCAGGTGGCACCGGCATTATGACGAGTC 47515 28 100.0 32 ............................ ATCAAGATACTGGTTAAAGGCATCGGCGCCAA 47575 28 100.0 32 ............................ GAACAGGCTCCTCGCTTGTACGTTAGTCGGCG 47635 28 100.0 32 ............................ AGTCGTCGGAGACAGCCCAGTACACGAGGTAC 47695 28 100.0 32 ............................ GTGAGACGTAAATTAAAGCTGTTTTTAAGCGA 47755 28 100.0 32 ............................ TGTTACGAGTGCGTATACTGGATATGGTTCTG 47815 28 100.0 32 ............................ TATAGTTACCGCGGCTATTGGCGTCTTCTCTG 47875 28 100.0 32 ............................ TGGATATGTAATATTGCGCTTTTTACCCGGCA 47935 28 89.3 32 ..........T.T.C............. GAGGGCCGTGTATCGTTTTAATTTGAAGAAGG 47995 28 100.0 32 ............................ ACATAACTCATGATTTCTGGATAACTCATAGA 48055 28 100.0 32 ............................ ACACTCCCATCACGTATGCGTGGATAGGCGTT 48115 28 100.0 32 ............................ AATATCGTTTACAAAATTCAGAAAAATAGTCA 48175 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.7 32 GTAAACTGCCGAATAGGCAGTTTAGAAA # Left flank : AATTAGAGAAATTAGATTTGAGAATAAAGCTAAGTAAGTTTGAAGATTATATACATATAACAAGAATTAGAGATGTTCCTACGAATGTTAAAGAATATGAAATATTCAGCCGTTATCAGGTAGATGGATCCGTACATCAAAAAGCGAACCAATATGTGAAACGCCATGACGGAGTTACGTATGAAGAAGCCGTGAAATTTTTGCAGCAAAAAGTAAGTAAAACAAAACTACCGTACATACAGATGATTAGCTTATCCAACCGCAACCACTTTAGACTGTTTGTCAAAAGGACGACAGTTAACAGTCCCTTACAAGGAGAATGTGGATCTTATGGACTAAGTTTACAATGTGCAATACCTAAATTTTAACCAAAAATTTCTGAAACTCGTTGGAATTGCATAAAATAGCGGTTGAAATAAGAGACGAAAATAATTGGGTATTAATAAGACAAATCTCAATAGCATAAGTCTGTGTCTGGAGTGAAGTGTTTTGGTGGAACA # Right flank : ATTACTGCTGTGCGAGCTATTTTTCTTGTTAAATACTTTAATACAATGGAGTGCGGTTGTGTTAATTGCTCTGGCAGTTATCCCCTATACTCGCAGAAGTAATTGTGAATCCATGCAAATGAGACCTCTTTTATATAACGCCGAGGAGGTATATTTCTCCATTCCGGCATTGTATAAAAGCGGTCATGTATGATTTCTGCCCGTTCTTTTTTACAGTAACCCGGCCGCTACGAGTTCATCGGCGTAGCGAACGGTACTCATGGCGTCTTTGCCGTAGCAATCCGCACCGATGGAGTCGGCGTATTGCTTGGTCATGACGGCACCGCCGACGACGATTTTACAATCCGGTTTTTTGGCATGCAGCTGGTTAATGGTTTCTTCCATATTGACTACTGTTGTTGTCATGAGGGCTGAGAGGCCGACGAGTTTTACATCGTCTTTGACGGCGGTCTCGACGATGAGTTCGGGACTTACGTCACGGCCGAGGTCGACGACTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACTGCCGAATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46556-43565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH417616.1 Anaeroglobus geminatus F0357 Scfld190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 46555 36 100.0 35 .................................... AAATTTCGTTGCTTATTACAAGTAAATCGCTTGTC 46484 36 100.0 36 .................................... CCGCGTTTCAACGCATCCGTCCGCGTTCTGTATCAC 46412 36 100.0 38 .................................... AAGAGAGGTTTGGCCATGATAAAGAGAAATTTATTGAG 46338 36 100.0 39 .................................... ACTCATTTTCCAAGAACAATTCACCACAGCATTCGCAAC 46263 36 100.0 36 .................................... AGGTAGTACAGATTGCGGATAGAATTTTTTTCATTC 46191 36 100.0 39 .................................... TAAACCACAATACGAACTCCATAATTAAACACCACCTTT 46116 36 100.0 38 .................................... GGATGTAAATAAATTCATCATCACAGATTCTCCATCCG 46042 36 88.9 2 ................................NNNN NN Deletion [46005] 46004 36 88.9 33 NNNN................................ AATGTATCACCAGGATATACTTCATCAATGTAC 45935 36 100.0 37 .................................... GTGAACTACTTTTCTTACGTAATCTCTTAAAAAATAG 45862 36 100.0 40 .................................... TGATTTACAGGAAGATTTTTTTAATGACTCGAGATTTGAA 45786 36 100.0 40 .................................... TTCCTTTATCTATATAACAGTAATAAATACAGTATATACT 45710 36 100.0 39 .................................... GGGAAGGACTATTTAAAGACTAATGCGGCCGAGATTGGG 45635 36 100.0 35 .................................... TAATGAGCTGTAATTATACTCTGCTGTGACTTCGA 45564 36 86.1 1 A...............................NNNN N Deletion [45528] 45527 36 86.1 38 NNNNN............................... GTGGGGACTTGGTGGCATAAAACATAATCCACCATTGC 45453 36 100.0 35 .................................... GTTCGACGTGTTTGCGTACTATCACCCCCGCGATC 45382 36 100.0 36 .................................... TCCGTTGTGTCGGGAAGGTTGGTGTTCGACGGAACT 45310 36 88.9 0 A................................NNN - Deletion [45275] 45274 36 80.6 37 NNNNNNN............................. ATAACCCCATCAACCCCGAGAGGAAACGGAAACTTAC 45201 36 100.0 38 .................................... ATCCGCGATTAAAAAGATATTCCGAAGAGCTTGTGATT 45127 36 100.0 37 .................................... TGCCCCAACGAACGCTTTAAAGTCATCTGCCTTATCG 45054 36 100.0 33 .................................... TCTTTAATTTTTACCATTGCGGCAATATCCTCT 44985 36 100.0 39 .................................... ACTCATTTTCCAAGAACAATTCACCACAGCATTCGCAAC 44910 36 100.0 36 .................................... AAACTTTGTTACCAACTCTATACATTTCTCTTAATT 44838 36 88.9 0 ................................NNNN - Deletion [44803] 44802 32 72.2 34 ----NNNNNN.......................... TTTGTATTTAGTAACTAACTTTTGATTTATTTTG 44736 36 100.0 39 .................................... ACTCATTTTCCAAGAACAATTCACCACAGCATTCGCAAC 44661 36 100.0 38 .................................... ATAGAGACCTAAGACTACTAACCCGTCCCGAGACGGGA 44587 36 86.1 1 A...............................NNNN N Deletion [44551] 44550 36 86.1 37 NNNNN............................... ACTTTACAGATTTCATAGATGAACCATAAACATAATC 44477 36 100.0 39 .................................... AGGAAAATTCTTAGGAACGGACATGACGCAAGAGAAGTA 44402 36 100.0 38 .................................... GCACCTTAAATTTGATGTTATTATTGGTCATTTTAATG 44328 36 100.0 34 .................................... CTTACCGTTTGTGGTGACCCGTTCAAAGTACCGG 44258 36 100.0 39 .................................... ACTCATTTTCCAAGAACAATTCACCACAGCATTCGCAAC 44183 36 100.0 38 .................................... TTTAGCCGTGCAGATGAACGATTACCGCATAAAACTTA 44109 36 86.1 0 A...............................NNNN - Deletion [44074] 44073 36 80.6 38 NNNNNN...........................T.. ATTTTTCTACCGCACCACCGGTCATTACCTGAATTACG 43999 36 100.0 35 .................................... CGAATCAATATAAGAGATTACGTTTCGGCGGCGCC 43928 36 100.0 36 .................................... GAGGTTTGTGTTTGATGGAATTACTTTATAATCCCG 43856 36 83.3 0 T..............................NNNNN - Deletion [43821] 43820 35 83.3 42 -NNNNN.............................. TCGTTCTGTCCAGCGTCTTTAACCACTCCAGGTCGCTGTCGC 43743 36 100.0 35 .................................... TTTCGCCGCTCCGTCGCTAACTGATACGCTCTTCC 43672 36 100.0 36 .................................... ATTGAATTGAATAGCCATAATTAAATACTCCTTTTC 43600 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 45 36 95.2 31 CAATTAATTACCTAAACCCCGAGAGGGGACGGAAAC # Left flank : GGCAAATACAACATATAATGCCGTTTTCCGAAACGGTGGGGCGTATAGTTGTTGTCACCGGGCAGAAACTTCGAGGAAATCTTCTGTTTCCGGCGCTTTACGGCCTGGCATACCTCAGCATGCCCTTAAAAAGCGACCGAAGCACTTGAATGATATACAGGAAGATATCATCTTATCGCCAACATTTTCGGTTTTGTTGGGGACTGTCGAGGTTCAGAACCTTTACAACATAAAGATTATAAGAAAAATACGGAGCCTTCTCAAAAGAGAAGGTCTTTACGTGTATTAGGAACATATGAACGGATACTTGCCTGATAATTGCAAGTCAGTGTATAATGACAGTGAAATTATGCGCTGTCACCGAAGAGTCCGCCCCGTTGTGATAGAGAGGCTATTTGTTCAAACTTTAAATGAAGAGGGGGCTTATGAAGGATGGAAAAACTAATCTGCCGCGCAACTCTCTATTTGGAGCACACAAGAATGCGGGTACCCGGAGACAG # Right flank : TTGAAGAATTCTGCGACTTCTTTTGCCGTCATTACTGAATTAATTACCTAAACCCCGAGAGGGGACGGANNNNNNNNNNTTTAAATTAATTACCTAAACCCCGAGAGGGGACGAATCCTTAAAATTTTTTCGATTGTCTTTTTCGATATACTTGGCTAATTTATTATTCACCTAATTTTTTTTCATTTCCGGCAGCTTTGTTATCCGAAAGAAGGGGATTCTATGCAGGAAAAAAATCCTATGAGACGGATGTGGCGGTTTGCCGAGGCGGAGCACGGGCGCCTGCGCCTTGCGATTGTGCTTGCGGCGCTCGGTGTACTCGCGGGTATGCTTCCCTACTTCGTCGTGGCAAAGCTTGTCACGACCCTGCTTTCCCGCACAGCGGCGGGGCCGCGCTTTTATATTTTCATGTGTTTCGCGGCATTTGCAGGCTATACGCTGCGCAGTCTTTTCTATGCATCGGCGCTTGCCGTGTCCCACCGTGCGGCATTTGCCGTACT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTAATTACCTAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //