Array 1 97721-97932 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMR01000005.1 Corynebacterium sp. 11A NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97721 29 100.0 32 ............................. GCTGGAACAGGCTCCTGCTGCGTTATTCCTCT 97782 29 86.2 32 ...G.......G.A..............T GTCATGCTGGATCCCATGACTCTCTATCGCTA 97843 29 96.6 32 ............................T GGGGATCGAATACCCGATGCTGGCAAGAATGT 97904 29 89.7 0 A........................AT.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTTTTCCCCGCTCCCGCGGGGATGAGCCC # Left flank : ATGATCTTTGATGAGCTTCGTAATAGGCATTCGTTTGATCTTGGCGGGGTGGATGACATTTACGAGCATTCCGAGCTGCTCCGTAGGCGCTGCATCGCACTTCGAGATGAGTAGTAGTGGCGGCCTTTCAGCCTTGCGAACTGAAAGAGAGTGCGCTCGGTCGAGGACCGTAGTGAATTTAGAGTCTGCCAAGTTGGGTGTGGTGGTTGTCGAAGGGAACGAAGCTCTAGCCCAGCAGGTACACCAGGTACACACTGACTAGATACATTTTGCAGCTCTTGGTAGCGACGTAACTATTTTTGTGTTTCGACCTTCTATGACGCGGCGGCTCTCTGATGTAGTGGATGCGCACCACGGAATCTCCTCCGGTCGGCAGGAAAGAACAACCGTGGGGATAGTTCTCGACGCCAACGCCGCACTAACAGATCGAAGTGGAAACCTACCGCTACAAGTTGTAGCTATGCCGAGCTAAGCGATAATATTTCCCTAGATCAGTAAGT # Right flank : CCACTATCTCGTGCGGCCTAGCCCCGCTTCCCAGTTATCTCTAAGGGCTGCCGCCGGCTGTGTATGCCGAGATAAAAGTGTGCGCTGTGGGTTGCGAGGAGAGCGATCAACACAAAGCCCTGATGGCATAGTGCGCGTGGGCATCGCCGAGATCAGCCCCGCGAGCGAGAAAAGAAGTGACGAATAAAAAGCGATCGTCTTCTATATCGCATCGCCCCTGTGAATCCCCGTACTGTCCCCGCCCCCGATACGGTGGGGTTATGACACGAGACGAAATCCTTATCGAGTTCATCACCCGCGCCCACGACAGCCTCGAGTCCCTCGGCGAGGTCGATGCCGCCACCGCCTCCCGTTCGCCGGGCGGGCACCCCAACTCGATGGCGTGGCTGCTGTGGCACACCGGCCGGATGCTGGATATTCAGCTATCCGAGCTCAGCGGCCAGCCCCAGCTGTGGCACACCCTAGAGCTGCGGCGGCAGCTGGGGCTCGGTGAGCTCGGC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154440-152764 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMR01000003.1 Corynebacterium sp. 11A NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 154439 28 100.0 33 ............................ CTGCTCGTTCGCGGCGTGATGTGCCTATTGCAG 154378 28 100.0 33 ............................ CCGCGAGTGGCTAGAAAGCGCAATCGCACGAGA 154317 28 100.0 33 ............................ CTAGGCTAGGTGTATGACTGAAACACGATGGTG 154256 28 100.0 33 ............................ TGGGGGCCGCCCGCCTGTGTTGAGCAGCTGCTG 154195 28 100.0 34 ............................ AAGCACCGAAGCCCCCTCCGCAGGGGGCCGGTAA 154133 28 100.0 33 ............................ CGAGGAGGAGAATACAGAGTTTGACGATTGATG 154072 28 100.0 33 ............................ GATTTGGGGTATCTTCGCCCAGCTGTCGGCGGC 154011 28 100.0 33 ............................ TACATCCGCAGCTGTAGTACCGCCCAGCTGAGC 153950 28 100.0 33 ............................ CATCCCACGGGAAGCCACCAGCGGTTTTCGGCA 153889 28 100.0 33 ............................ CAGTGTCGTAGAGCCGTCGCTGCTCGGTGTCAG 153828 28 100.0 33 ............................ CATGCTCCGCAACTCGGGGCTCACTCGCGAGCC 153767 28 100.0 33 ............................ GTAACTGGGGCTAGCGCCCCAGACCCGAACCGG 153706 28 100.0 33 ............................ TCCTCCGAGATCGCCCGCCTTCACGCCGTGGTG 153645 28 100.0 33 ............................ TCCACTTGAGCGCATTCAATATAGCGTCGCGAC 153584 28 100.0 33 ............................ CCCGTTCACCCCGGCGGGGGTGCAGTTCCCGAA 153523 28 100.0 33 ............................ CCACCAAGGATCCCTTGTTCACGTACAGGACGC 153462 28 100.0 33 ............................ CATGCTCCCGCAGCGCCAGTTTCAGCAGGTACG 153401 28 100.0 33 ............................ CCTCGTCCGGCGCCCCATTCGGGGCGATACGCC 153340 28 100.0 34 ............................ AAGATGCGTATAGATCGCTAGCGTGAGCGCCGCG 153278 28 100.0 33 ............................ CCTCGTCCGGCACCCCATTCGGGGCGATACGCC 153217 28 100.0 34 ............................ AAGATGCGTATAGATCGCTAGCGTGAGCGCCGCG 153155 28 100.0 33 ............................ CGTGGCGGGGTGAACGTGCCAAGCTAGCGAGAG 153094 28 100.0 33 ............................ CGTAGGCGGGACTAGTCATCGGGTGGTCCTTTC 153033 28 100.0 33 ............................ CACGTTCACGATCTTGTCCTTGAGAGAGCCCAG 152972 28 100.0 33 ............................ TGCCGCTTACGATTGGCCGGTGCTCTATCAGTA 152911 28 89.3 33 .........A..........GA...... TGGCCCCCAGTGGCGGAGCAGGTAGAAGAGGAT 152850 27 75.0 29 .....C..........T..T-...AG.A GGTGTAGCCGATACTAAGTACGCTAGGGG 152794 28 78.6 0 .............AT......C.A..GG | CT,G [152770,152790] ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.0 33 GTTTTTCCCGCACGCGCGGGAGTGGACC # Left flank : TTTTAGATGGCGGTAAGACAGAGCTATCTGGAGGGTGGCTTGCCGCCAATGGCATCGTATTCAAACGTATCCAGGACGCCCCGCCTGTCAGCGTTGAGATGATGCTTCACGCTAGTAAAGGATGGCAGACCTCCCCAGAGCTTGGAGCATCTGACCATATTCTCGACCGGCTCTCGGATACAGCGCCCGACACGGTAAGAGTAGAAGAATACTTACCTATTGCCGTGGGCATAGCCGTGTCAGGGCGTCCCTTGGCCCAACACGGAGTGGCGCACCTCAAAGGCCGAAAGAGGTTTCTTCCGCGCCCGACATATCCAGTAAGTTTATGGACTCTAGAGGTTCTATCGAGGAGACACCGTGGTTCTGGTCTGTTGGCGGAGGAGGTGACGCGCGGGAAATTTAAGACTGTTGCTCCACCGGTCGTAGTTTAGTTCGTTCAAGGCGAATAGAAGTTGAATCTATACGCCGTGTTTGCTCGCTAAACCTGCTGTTCGCAGAGG # Right flank : TAATGAAAAGAGAAAGCTTGGTCTTGAACCGACGTACCCAGCAATCGACCTCTTAATTTAGAGGATAAAAAGCGTCACATGCCTTATATTCTCACTGGCCTGTAAGCAGCAATCGCAGCTGTACAACGCGCAGCTGGAGACAATAGTAGTAACTAGGGCGCACTGCTTATACGTGTGCTTACTGCATGAGCATGACGTACATGGCTAGAGAATTGGTTTCTAGATCGATCTCCACCGTTGTTGATTCTGGCACCAAAGGTGATTGTGTGGCCTCAGTGCTTTGTTTTCATTCTTTGGCGAGTTTGTGTCCATGTTGGATTCTAGGCGTAGTGAGGCTCAGCCTCCGCCTCTTTCACTTGCCTCCCCGCCGTATCCGCTCTGGATACTGCTGTTGCTGCCCGCGCGGCGGCGCGTGGCATGATGGAGGGCGTGTCTGTACCAGCCCTGCACCTCATTCTGGGCGAGGAGGAGTTCCTCGCCGAGCGCGCCCAGCGCGCGGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACGCGCGGGAGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 25700-23871 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMR01000009.1 Corynebacterium sp. 11A NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 25699 36 100.0 28 .................................... CGAGATCGTATGGCACGCCTTTGGTCGT 25635 36 100.0 28 .................................... CGAGATCGTATGGCACGCCTTTGGTCGT 25571 36 100.0 28 .................................... ATCCGGCTGAAGCGGGACAGTTGATTCC 25507 36 100.0 28 .................................... TATGTTCCAGTAGGCCCTCGACGATGTA 25443 36 100.0 28 .................................... CGAGCTGCGGATCACGGAAGGCGGCGGC 25379 36 100.0 28 .................................... TCGGGGCTACTGGCCGGTGCTGCCGAAT 25315 36 100.0 28 .................................... ATGAGGATACGCCGGTACTTCTTCTTCC 25251 36 100.0 28 .................................... CCTGATCGAGCCCAAGCCCGGCGCGCGC 25187 36 100.0 28 .................................... AGGTGCGGCGATGGTGTGCCACCGAGGC 25123 36 100.0 28 .................................... CGTCCGCGCGGCAGCCCCGATGTCATCC 25059 36 100.0 28 .................................... GTGTCGTGGGACTCTCACCTACAGAAAG 24995 36 100.0 28 .................................... TACTTGTGTGAGCTGTTCCCGCGCGAGC 24931 36 100.0 28 .................................... GGAAACACTATTTTTCTCCTATAGGATC 24867 36 100.0 28 .................................... CACCACGATGCTTGCGTCAGACTCGTCT 24803 36 100.0 28 .................................... TACCTCGGTCACATACTCTGGTGTGTCA 24739 36 100.0 28 .................................... GAGATGCTGCGATAATGATCGCGATAGG 24675 36 100.0 28 .................................... TGATGGCCCGTCTCGTGCCAGAGTGGCA 24611 36 100.0 28 .................................... TCGCTGAAGTACGCGACCGCGCAAGTCA 24547 36 100.0 28 .................................... TCATGGAGATCGGTAAGGCGGTGTGGGA 24483 36 100.0 28 .................................... GGAGGCGTCGGCAGACGTGAAATAGGGC 24419 36 100.0 28 .................................... TGCTGGTTGGTGGGCGGCTTGGTACATG 24355 36 100.0 28 .................................... TTGCTGAGATGTGGGTGGTGATCTGTTG 24291 36 100.0 29 .................................... ATCTTGGTTATCGGCGGGGTTTTGGTGTG 24226 36 100.0 28 .................................... ACCGCGTTAGGATCCCAGCCCGATTCGT 24162 36 100.0 28 .................................... TTGGGCGCGGGCTCGCCGCTCATGGCGC 24098 36 100.0 28 .................................... GCGCTGTGGAACATCAAGTGCAAGGTGA 24034 36 100.0 28 .................................... TGCAGGACGAGCGCGGCGGTTTCGGCGC 23970 36 100.0 28 .................................... TAGCCCCAGTTACAGAAGGGTGGGGGTT 23906 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== ============================= ================== 29 36 99.9 28 GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Left flank : CATTCAACAGCGATGGCCAGAGTGTTTCTACGGTCTTTCAAGACTTTGCGCAGCATTTTGGCTTATACGTCGAAGGAACAGTGGATCGGCTACAGGTGCCACGTTGGGAAGGGCAGCTCAGTGCCAGCGAAGGACAGTGAACCGGTGTGGTGCGTCGTAATGTTTGATCTTCCGGTCAAGACCAAAAACCAACGTAGGGAAGCTAATCGGTTCCGTAACCGGTTGTTCGACCTTGGTTTCTGCCGCGCCCAGTTCAGTGTCTACGTTCAGTATTTCCCACTGGCGGCGCGTCTCAGCACGATAGTAAAACAGGTGAAATGCGAACTTCCCGCAGGCGGTGAAGTGCGTATCTTGTCCGTGACAGACCAGCAGTGGGCAAAGGCGATCCGTTTTTCGAGCCACAAGGAACAAGCGGTCGAGAAAATCCCCTCTCAACTCACGATTTTTTAAAAACGCATGCTGAAAAAGACCCAGTTCAGGCCCTGTTTCTGGGCCTGACT # Right flank : GAAAGTGGGCATAGTGGCTATACTCGGTGGAAGCCTATGGCGCTGCATCACGCTTAACGGCAGTACCGCTTTCCAAGCCCTGCGCTGCGATGATCCCACAACCACAAGCCTGTGGCTTTCTGCAGGATCACCGCCCCGCGACCTACCGCGTCGCCTCCTCCAGCAGGTACAGCACGTGCTCATAGCTCCGCCCAGTGATTTGCTCCATGCCCAGCTCGCAGGTGCGGTTGGAGGACACATAGGCGTCCACGCGCCCATCAGCTTCGGCCTCGGCCAGCCCGACGCGCTCATCGCGGGTGGCGGCGTCGAGAAGTTCGGGGTGGAGCATGCCGCGGTCGCCGGCGGTGCCGCAGCAGCCGGCGCCGCGGGGCACGAAGGCCTCGTCGGCGGCGAAACTGGCGACGCGCACGAGGGTGTCGCTGAGTTCCATGTGGGCCAGCGAGCAGTTCGGGTGCACGGCCACCCGCCCGAGGCGGCGGGTGGGTTCAAGGTGCTCGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //