Array 1 107590-108998 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWW01000002.1 Pasteurella multocida strain HND21 Contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107590 28 100.0 32 ............................ GTTTGGAAAACGAAGAGGTCAATATCTTGCAT 107650 28 100.0 33 ............................ CTACTCCGTCAAAACTATACGTAAAAACTGGAA 107711 28 100.0 32 ............................ TGCAATATTGTAACTTGATAAATGCGCCAACT 107771 28 100.0 32 ............................ TCAATGAAAACCAGGTATCATTATTAACTAGT 107831 28 100.0 32 ............................ AAGAACTTCGTCAAAAAGGATTAAGTGAGCAT 107891 28 100.0 32 ............................ TTGATTTAATTAAAGATGGCGTAGGAGGTTGC 107951 28 100.0 32 ............................ ACTTCCGATTGCTAACCAAAAATTATCATCAC 108011 28 100.0 32 ............................ ATTAGACCTAATTAAGAGCTATGAGAATGCAG 108071 28 100.0 32 ............................ ATCTTGTTCTCCTTGTTTGTATCTCGTTTTGA 108131 28 100.0 32 ............................ GCTTGATTGGCGAGCCTAAAACAAAGGCTGAT 108191 28 100.0 32 ............................ AAAAGGACTGGGGCTTGTTGTTATTGAGCGTA 108251 28 100.0 32 ............................ CTAGACCATTTTGAAGTGGTAAATTTAGCGTT 108311 28 100.0 32 ............................ TTTATAGCCAATCTGAAATTGTGCTTCGTATT 108371 28 100.0 32 ............................ GTTGAAAACAGTGATAAGGTTTGAATTTGTCA 108431 28 100.0 32 ............................ ACAAAAAACGAAAGAATTGATTGACGAATAAA 108491 28 100.0 32 ............................ TTTTACTGGCTTAACAAAACAATGTAAAAAGT 108551 28 100.0 32 ............................ GAATGGTACGAAAAATCAGACACTTTGAGTAG 108611 28 100.0 32 ............................ ATATATAAATAACGTCTTTGATATGTTTGTAA 108671 28 100.0 32 ............................ ATATATTGATGTGTTTCATAATCGTTTCCTTT 108731 28 100.0 32 ............................ GCAGCAGAAACGCATTACAACGGTTGTGGTAA 108791 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 108851 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 108911 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 108971 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22992-23559 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWW01000005.1 Pasteurella multocida strain HND21 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22992 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 23052 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 23112 28 100.0 32 ............................ ACTAACGAAAAAAAGAAAGTGTAGAATGGCAT 23172 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 23232 28 100.0 32 ............................ TTAGCCACCATCTCGGCAATCTCGAGCCGGCG 23292 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 23352 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 23412 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 23472 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 23532 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : ATCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //