Array 1 107477-106062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZS01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST1660 ST1660_0003_0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107476 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107415 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107354 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107293 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107232 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107171 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107110 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107049 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106988 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106927 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106866 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106805 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106744 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106683 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106622 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106560 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106457 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106396 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106335 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106274 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106213 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106152 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106091 29 96.6 0 A............................ | A [106064] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125590-123609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZS01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST1660 ST1660_0003_0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125589 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125528 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125467 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125406 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125345 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125284 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125223 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125162 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125101 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125040 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124979 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124918 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124857 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124796 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124735 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124674 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124613 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124552 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124491 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124430 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124369 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124308 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124247 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124186 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124124 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124063 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124002 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123941 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123880 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123819 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123758 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123697 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123636 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //