Array 1 161052-159068 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBC010000062.1 Salmonella enterica isolate 4159_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161051 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 160990 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 160929 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 160868 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 160807 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 160746 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 160685 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 160624 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 160563 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 160502 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 160441 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 160380 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 160319 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 160258 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 160197 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 160135 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 160074 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 160013 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 159952 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 159891 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 159830 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 159769 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 159708 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 159647 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 159586 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 159525 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 159464 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 159403 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 159341 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 159280 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 159219 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 159158 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACATCTCTAAAAA 159097 29 96.6 0 ............T................ | A [159070] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAAGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGAATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGGTTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177507-177174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBC010000062.1 Salmonella enterica isolate 4159_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177506 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 177445 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 177384 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 177323 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 177262 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 177201 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //