Array 1 24184-23545 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVG01000002.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1612B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24183 29 100.0 32 ............................. TTGTGGTGCATGTGGCGGCTGAGCACGTTGGG 24122 29 96.6 32 ............................C TGATTGACCTGTTTGCGCAGGAGCGTGACGCC 24061 29 100.0 32 ............................. CAGTGGGAAAAGCGATAGCTCGCAGGATTCCA 24000 29 100.0 32 ............................. AAACGGCGTCCAGCGCGCGACTTGCCCTCGAC 23939 29 100.0 32 ............................. TAGCGGGCTTCGGTGTCGACGCTCAGGCCGGC 23878 29 100.0 32 ............................. GCGAGGCTGCGGCAGAAGGTGAAACGCTGCCG 23817 29 100.0 32 ............................. ATTCCACTTCACCTGCCGGCGGATGACATTCA 23756 29 96.6 32 ............................T TCGAGAATCCTACGCCGATCGGCATCGTCCAT 23695 29 100.0 32 ............................. ATGCCAATATGATTCAACCGTCGGTGAGCGGC 23634 29 100.0 32 ............................. GACGCCGAGGACCACTTCAAGGCGTATACGGA 23573 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : TGCCGACCGATGTTTGCCCCGTATGTGCGGGGATGATCCGGCCCTACAACGAGTCTTACAACTCAACCACAGGGCAGCCAATAAACCCGCGAAAAACACCATAAGGAAACGGACATAACAATGCACACGCCAACAGACCCAACAATGAAATACAGGGAATACTACCCGCCAGTCGACAAGGAAATCGCCGCCCTGCCGACGTGCGAACCCGGCGAAAAACCGAAACCACTGCTAATCCCCGAATACCTGTTCGACACCGACGACGAGCAGGCAGAACCACAGCCGGACAACACGGAACACGAGCCACACACCGACCACGACCCAAAAGCGGACGGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGTACGCGCTCGAAACACTCG # Right flank : TAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAAAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTTGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCAACAGTGTCTGTTTTCTTGCTATGGGTAGTGCTCTTTTCGCTACGGGTAGTGCGTTTCTGGCGCACTCGTCACTATGAGCCGCCATATTTCAACGATTGTAGGTGGGAATTGCCCGAGGAACTACTACCCGTAGCGGGAGGAGCACTACCCGTAGCGAAGAAGGCACTACCCGTAGCGGCGGTGGTGCCACGGTCAACGCGAATTCGCTGTTTATGTCACCTACACGGTTGTTGGTGTCGATGTCCAGACATCAGCAGCCATATGGGACGCGATTATTGGACTCCCGTGACTGACCTCAGCCATCAACTACCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24917-24644 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVG01000002.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1612B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24916 29 72.4 32 C.G..T..T...AT......AG....... GAGGGAGCGCAGTGAGCCAGCAGAAACACGCC 24855 29 100.0 32 ............................. AACCGCGTCGCCAAGGCCGTGCAGAAGGTCAT 24794 29 100.0 32 ............................. ACGGTGTTGGAGATCGTCGGCCATACCACGAT 24733 29 96.6 32 ............................T TCATCGTGCGTCGTCGCGGCCTGCCGACCGAT 24672 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GCTCGGTGTCCAGCAAAGTGAGCGTTGATCCCTCAATCGCGTTGGAGTTGTATACGTAGCGGCTCAGCCAGTCGCGCCTGTGGTCATCGATGGCTGATTCCTCGATGCCGTCCTAGGGGAGTGTGGCTTCAAGTTCTTTTTTCGTGTTGTCGATGGTTGACAGCATTTGGCGGATACCATGTTCTTGCTTCAACCGGTCCAGCGTGAGGGGGAGGTCCTGGATGCGCTGCAGCAGTTGCGGGTTGGGTGTCATCGATCCCGCACGGGATGCATGTTCGGCCATGTAGTCTGTTCTCCGATTTGCTCATGCCGAATAAGTCGACATAGAGGTGATAAGCCAAGCCATCTTGAAGGAGGGTCTTGGCGTTGGGTTGGATGGAAAATCCCGCAGACTGCAGGTCGATAGTTCACCATGATACAGATGGGTAGCGAAAGTCCCCCGCATAGTATTTCAATGCTCTAAGTTGTTTGCTGGAGTGATGGCCTTCCCGTTATACTTA # Right flank : GCCCTACAACGAGTCTTACAACTCAACCACAGGGCAGCCAATAAACCCGCGAAAAACACCATAAGGAAACGGACATAACAATGCACACGCCAACAGACCCAACAATGAAATACAGGGAATACTACCCGCCAGTCGACAAGGAAATCGCCGCCCTGCCGACGTGCGAACCCGGCGAAAAACCGAAACCACTGCTAATCCCCGAATACCTGTTCGACACCGACGACGAGCAGGCAGAACCACAGCCGGACAACACGGAACACGAGCCACACACCGACCACGACCCAAAAGCGGACGGCCATGACCAATGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAAATCACCGACATACTCAACGGAACAGCACCACTCGAAATAACACGCGAACACGCACTCGACGCATGGGGCATGCGCATATACGAGGACGAATACCTGTACGCGCTCGAAACACTCGGTTTGCCCCGCATGTGCGGGGATGATCCGTTGTGGTGCAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //