Array 1 212-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JUCL01000097.1 Escherichia coli strain CVM N36400PS N36400PS_contig_97, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       211	    29	 100.0	    32	.............................	CGGCTTGTTTAATTGCGTGGAACGTCTCAATT	
       150	    29	 100.0	    32	.............................	CCGGAGATCATCATATTCTGATACGTTCCGGT	
        89	    29	 100.0	    32	.............................	CGTTATTTACTGCTTTTTCATCCGCTCTGCTG	
        28	    28	  96.6	     0	............................-	|                               	
==========	======	======	======	=============================	================================	==================
         4	    29	  99.2	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   |
# Right flank :  C

# Questionable array : NO	 Score: 5.82
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.24   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 51-506 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JUCL01000084.1 Escherichia coli strain CVM N36400PS N36400PS_contig_84, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        51	    29	 100.0	    32	.............................	GCAGCAATTGCCGGAGTTTTACTAATTGCCTC	
       112	    29	 100.0	    32	.............................	TTTTGATTTCATTAACGGCGCTCCCCATATTT	
       173	    29	 100.0	    32	.............................	TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA	
       234	    29	 100.0	    32	.............................	GCACCACGCGTACCCCGATGTTTGTTTTGCCA	
       295	    29	 100.0	    32	.............................	ATCCGGCTATATCTTTGAGCATTACAGAAATA	
       356	    29	 100.0	    32	.............................	CTATTGCTTTCGTACAGATTTTCAGTGGTGCT	
       417	    29	 100.0	    32	.............................	AAAATTCTGTGTTTCGACCATTACTTCGGTAA	
       478	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         8	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GCCAGCGGGGATAAACCGCTCTTTCTCAGTCATCTGGCGCTCAACGCCGGG
# Right flank :  GGGGTAGAATTATTCTTCGTGAGCGATTTATCGTGTTCCCCGCGCCA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.24,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//