Array 1 394-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LINX01000013.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N50432 N50432_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 332 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 271 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 210 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 149 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 88 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LINX01000050.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N50432 N50432_contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 61 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 122 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 183 29 100.0 5 ............................. AAAAA 217 29 96.6 0 ............T................ | A [244] ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 26 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.76, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 290110-288189 **** Predicted by CRISPRDetect 2.4 *** >NZ_LINX01000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N50432 N50432_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 290109 29 100.0 32 ............................. CGTGCTGCCGTTCAGTGGGGAATTGGTCGGTA 290048 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 289987 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 289926 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 289865 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 289804 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 289743 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 289682 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 289621 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 289560 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 289499 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 289438 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 289377 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 289316 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 289255 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 289194 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 289133 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 289072 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 289011 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 288950 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 288889 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 288828 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 288767 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 288706 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 288645 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 288584 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 288523 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 288462 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 288401 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 288340 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 288279 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 288218 29 96.6 0 ............T................ | A [288191] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307143-306872 **** Predicted by CRISPRDetect 2.4 *** >NZ_LINX01000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N50432 N50432_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 307142 28 96.6 32 -............................ ATAAATTATCGGGAAATCATAATCAGCGCCGC 307082 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 307021 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 306960 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 306899 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_LINX01000051.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N50432 N50432_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 111 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 172 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 233 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 294 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGCGACCTGCTCGACAGCATTCAGTTTGTTGTTG # Right flank : TTAGTATCAGTATAAATAACCACGTATTCACCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //