Array 1 1093597-1096366 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXH01000002.1 Clostridium perfringens strain NCTC10240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1093597 29 100.0 36 ............................. TTACATAAGCTAGAACATACAGTTGAAGGGAATTTA 1093662 29 100.0 36 ............................. GTCAGATTCCCTTTTATCCAACTCTTTTTTTTGCTC 1093727 29 100.0 37 ............................. TTTGAAAATATATGGGATAAAATATTAGATTTTTTGA 1093793 29 100.0 36 ............................. GGTATTAGTTAGCTACAATTGAATGCAGCTACAATT 1093858 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGAAAAGTTAAA 1093923 29 100.0 37 ............................. GTTGATAAACCAGTTGAAAATATATGGGATAAAATAC 1093989 29 100.0 36 ............................. TTAGGATCTTTATCTAAAACAGTATATTTTTTCATT 1094054 29 100.0 36 ............................. TTATCAATATATTGATTAAATAAAACATAATTTCTT 1094119 29 100.0 36 ............................. ATTAGTATAACAAGTCAAGAAAAATTTACATAAAAA 1094184 29 100.0 37 ............................. GCTTATAGTGCTACTTCAATAGAGACTAGGGCAAATG 1094250 29 100.0 36 ............................. AGATTTAAAAAACCTAGTCGTGGTCGTTTATTTTTT 1094315 29 100.0 36 ............................. GTAGAACTTCTTACACTTTTAACGCAAAATAGGAAA 1094380 29 100.0 36 ............................. TAGTTTTACCATAACCCGGAAGTCCAAAAAATCCGA 1094445 29 100.0 36 ............................. ATTGAAAAGAAGATGTAAAATTCATATTCGTATAAC 1094510 29 100.0 37 ............................. GTTGAAGTATATCCTAATTTTAAGGAAATGGAAAAAG 1094576 29 100.0 36 ............................. TCAAATAAGTACACGCTTCCTTCATAGTCCTCTATT 1094641 29 100.0 37 ............................. AAATATGTTAAAATATATGTAAACATATTTTAGGGGG 1094707 29 100.0 36 ............................. AAATTTATCTATTTCATCGCATGTCCAATCCACAGT 1094772 29 100.0 35 ............................. GGAGAATTGGTTCCAGGAGTTTTTAATGCAGATAT 1094836 29 100.0 36 ............................. AGTCAACAGATTCATCAATATCATCATAAGTGTAAT 1094901 29 100.0 36 ............................. AGATTTAGATTTCATGGGCAGGGGCTTTGAAACAAC 1094966 29 100.0 37 ............................. TCTTAATACAATGTTGGAATACAATTAAGGCTGTTGC 1095032 29 100.0 36 ............................. TGGTATGTTAAGATTAATTTTTTTAGGATCTACTGC 1095097 29 100.0 37 ............................. TGCTAGAACATTAGTCAAATAAGCAATCACAATGGCA 1095163 29 100.0 37 ............................. ACTAGAAAACTAAGTTCCCTAAATACTTTATCTACAG 1095229 29 100.0 37 ............................. GTGTATTTTTGCATGGGATGAAGTGCAAAATGAGTTT 1095295 29 100.0 36 ............................. AAGGACAACATGGAAGAAGCCAATATCATGAGTATC 1095360 29 100.0 36 ............................. TATATGCAAAAACATTTTAAAGTTAAAAGAGATATG 1095425 29 100.0 37 ............................. CAACATACACTAGGTATGTTATTTGAAGATAAGATTA 1095491 29 100.0 36 ............................. ACTATACCAGCTTTGGCAGAAGGAGGAATAGTTACT 1095556 29 100.0 36 ............................. TTTTTAGAAAGTTTGGAGGAATAAATATGTTTAAAG 1095621 29 100.0 36 ............................. TGATGACTTACCAGATGCTTTGGCTTCTGTTGTAGA 1095686 29 100.0 36 ............................. GCAATAAGCAATAATATTGTTGGAATTATATTAAAG 1095751 29 100.0 36 ............................. TATTTCTACAATTCTTACATTGAACTGACATTACTT 1095816 29 100.0 36 ............................. GAGGTTGCTGCTAGATTTGTTAATAGACAAATGTTA 1095881 29 100.0 36 ............................. TTTTTAGAAAGTTTGGAGGAATAAATATGTTTAAAG 1095946 29 100.0 36 ............................. TGATGACTTACCAGATGCTTTGGCTTCTGTTGTAGA 1096011 29 100.0 36 ............................. GCAATAAGCAATAATATTGTTGGAATTATATTAAAG 1096076 29 100.0 36 ............................. TATTTCTACAATTCTTACATTGAACTGACATTACTT 1096141 29 100.0 36 ............................. ATGCTCAAAGGACTTTAAATATTAGAGTGGTGGAAT 1096206 29 100.0 36 ............................. AGTAACCTTTCATCATTAGTCTTAGTCATATATTTA 1096271 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1096337 29 86.2 0 .................GAA....C.... | T [1096364] ========== ====== ====== ====== ============================= ===================================== ================== 43 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATATTTATTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //