Array 1 40923-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRE01000015.1 Escherichia coli strain MOD1-EC5187 MOD1-EC5187_15_length_120407_cov_92.0374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40922 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAAGTTTTCATTA 40861 29 100.0 32 ............................. GTCACGCTGGCCGGTATTGGCGGATTGATTGG 40800 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40738 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40677 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40616 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40555 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40494 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 40433 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40372 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 40311 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40250 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 40189 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 40128 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40067 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40006 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 39945 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39884 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39823 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39762 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39701 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39640 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39579 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39518 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67506-66623 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRE01000015.1 Escherichia coli strain MOD1-EC5187 MOD1-EC5187_15_length_120407_cov_92.0374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67505 29 100.0 32 ............................. AACGGCAGCAGCCTGAACGATTGCAGGCACTC 67444 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 67383 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 67322 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 67261 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 67200 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 67139 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 67078 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 67017 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66956 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66895 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 66834 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 66773 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 66712 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66651 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //