Array 1 1734059-1733347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021392.1 Bifidobacterium breve strain NRBB51 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1734058 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 1733991 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1733925 33 100.0 33 ................................. TCACGGGCGATGAACTGCTTGTCGGTGCCGTCC 1733859 33 100.0 35 ................................. TTGGACAACGGGTACCGGTTGCCGTCCATACGGCG 1733791 33 100.0 36 ................................. ACCTCAGTAGACGTAGCCGTTGCGGCGGGCGCGCGC 1733722 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1733653 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1733584 33 100.0 35 ................................. TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 1733516 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1733448 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1733379 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 98.3 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCTCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCGGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACAAGCATCGCCGCGACCGCCGCCGAAGTGGCGCAA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGTACTATTTTGTATCCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1743075-1739125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021392.1 Bifidobacterium breve strain NRBB51 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 1743074 33 100.0 34 ................................. CCTTGTGGGTAGTGTAGGTTTTCCTGTTGTTGCG 1743007 33 100.0 35 ................................. GTGCAATGGGTGAAACATGCGGATTGCCGAAAGCG 1742939 33 100.0 34 ................................. TGACGCGGGTTACGAGCACGGCCTTGGGTTTGGT 1742872 33 100.0 35 ................................. ATGGTCTGCACGAACTTGTCGGTGCTGTCGCTCAT 1742804 33 100.0 34 ................................. ACCGACGATGAAGACCAGCCCGCAATAGTGCTGA 1742737 33 100.0 35 ................................. TTGAAGTGGTCGCCCGCGTCCTTGCCCGTCTGCGC 1742669 33 100.0 35 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCGA 1742601 33 100.0 34 ................................. GACCCCATCACCAAGGCCATCGGCCTTTTGGCCG 1742534 33 100.0 34 ................................. TCCTTGACTAGATGGATTGGTTAACAATTGGTTG 1742467 33 100.0 34 ................................. AATGCCATTGTTGTGTCCTTTTAGTTGTCGTGTT 1742400 33 100.0 36 ................................. GTCGGTGATAGTAAGCTGGACCCTAACGCCAAGTAC 1742331 33 100.0 34 ................................. AGGCGAAGCAAGTTGATGACAAAGCAACGCCTAA 1742264 33 100.0 35 ................................. ATCGAGCCCCCTGACATCGATTACCCCATGTGGGG 1742196 33 100.0 35 ................................. AATCCGTATTTTCGACATTATGAAGTGCCCCTCAA 1742128 33 100.0 32 ................................. AGGACGGCCATCAGGGCCGCCATGATCAGACA 1742063 33 100.0 35 ................................. CTGGAGTTTGCCCGAAGCGCCGGGGATGGCGTCGG 1741995 33 100.0 36 ................................. TCCGCCTTGCTCAGGAGCCAGCTGATCGACTGGCCG 1741926 33 100.0 33 ................................. TCCCGCCAGCTCGCCGAACACGGGAGCGTGATC 1741860 33 100.0 33 ................................. CGTGGCGAGCGGTGGCAGTGGGATAGGTACGCG 1741794 33 100.0 35 ................................. GTCGATGACCAAGCCCGTCTGCATGTCCAGCGTAA 1741726 33 100.0 33 ................................. CGTGGCGAGCGGTGGCAGTGGGATAGGTACGCG 1741660 33 100.0 35 ................................. GTCGATGACCAAGCCCGTCTGCATGTCCAGCGTAA 1741592 33 100.0 33 ................................. ATACAGCAGAAAGCGCAGGTAACCAACGAGGTG 1741526 33 100.0 35 ................................. ACGTGAAACACAAGAACAGTGGTTTGACAAACTGG 1741458 33 100.0 35 ................................. GATATCGTCCATAATCACCTCTTAAAGTAGGAGGC 1741390 33 100.0 34 ................................. GCGTTGTTCGCCGCCGCCGTCGCCGTGGTGATGT 1741323 33 100.0 35 ................................. GCCAACGCCTGACAGAAAGGAACCCGACCATGGAA 1741255 33 100.0 35 ................................. GCATATTATCCACATATCATGTCGCAAATCACAGC 1741187 33 100.0 36 ................................. GCCGTGCTACGTCATTACAGTGATGGCAAACGTGAA 1741118 33 100.0 35 ................................. TGGACGGGCGCGGGTTCCACTGCCAACGTGGTGGC 1741050 33 100.0 39 ................................. AACAACGCACAGATTCTCAACATGATTCGCAACGAGGCA 1740978 33 100.0 34 ................................. ACGTATCGGGACGGATTGACCACGTTACAATTAA 1740911 33 100.0 35 ................................. ATGGACAAAATCGCGCATATCAAACAAGGCGATTA 1740843 33 100.0 34 ................................. TTTGTCGGCCAGTGCGTCCGCGTAGTGGCGTAGT 1740776 33 100.0 35 ................................. GCATCATCCTGGAATGATGGGCGCCGGCGATAATC 1740708 33 100.0 35 ................................. AGGATCGACCAGTGGGGAGATAACGCTTCGACTCA 1740640 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 1740577 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1740509 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1740441 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 1740373 33 100.0 35 ................................. ATTGACTTGGATTCCATGACCGACATGGAGGTCGC 1740305 33 100.0 35 ................................. GCGTAGTCTAGGCCCCACGCGCCGGTCGAGGCGGT 1740237 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 1740169 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 1740102 33 100.0 33 ................................. TCCTGCGCATCCTTGGCCTCACGTTTCGCGGCT 1740036 33 100.0 35 ................................. TTCGCGGCGCTGCCTGCGGGGATGTGCTCGAACGC 1739968 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 1739900 33 100.0 35 ................................. TATGACACGGTTATATTGAGCACACCGCGACAGTG 1739832 33 100.0 35 ................................. ACCATAGCCCACGAACTCGGACACCTGCTGCTGCA 1739764 33 100.0 34 ................................. CCCGACCTGCGGTTCGGCACGGTCTCCCAGCCGC 1739697 33 100.0 35 ................................. GCCTACCACCTCCAAGACGCCATAGGAGCAACCAG 1739629 33 100.0 33 ................................. ATCACCAGACGATAAAGACCAGGCTCACTAATG 1739563 33 100.0 35 ................................. AAATGGGAGAACAGCGGCCTGTACACCGGCCTCAC 1739495 33 97.0 34 ..T.............................. ACCATCGCCGCGCTGCTGCTCGTGCCGCACGCCA 1739428 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 1739359 33 100.0 33 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATAC 1739293 33 100.0 34 ................................. AGCGTGGAGTGGGAGCGGGCCGGGACGGAGCAGG 1739226 33 100.0 36 ................................. CTCCGGGGATTGAAAAGCGCATGGGACGGCGTGACC 1739157 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 59 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGGCCTATCGGCCAGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //