Array 1 62028-65995 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQC01000011.1 Natranaerobius trueperi strain DSM 18760 ZB100010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 62028 32 100.0 37 ................................ TGCCCGAAACACCTAAAACTAAACTGTCAATAGACAG 62097 32 100.0 34 ................................ CTGCAAACTCATCTAATAGCTCATTTACACAATT 62163 32 100.0 34 ................................ TTCACTTAAACCATCTGTATAACTTTCGATCATT 62229 32 100.0 35 ................................ TATCTAGCAGTGCTGCGTTTGCATTAACTGATTTG 62296 32 100.0 34 ................................ ACCGTATTTAATTGAAAACTATATTAGGTCCGGG 62362 32 100.0 39 ................................ ACCTTTAAAGGTAGCTTCGCCAGTTGCACGTTCCGATCG 62433 32 100.0 33 ................................ AACTTTGCAACCTTTATAATTAGAAGTAGATAG 62498 32 100.0 36 ................................ AATTAATAGTTCTTGCAAACAAAAACCTCCTTATAT 62566 32 100.0 36 ................................ TGGTGCATCTCTATCGTGAAACCAATATAAAGTTAA 62634 32 100.0 36 ................................ TATTTCTCCCTCTATACGACCTTTTAACTTTTTTGC 62702 32 100.0 34 ................................ ACTTGAATAGGCGACTGGTATACCTAGAAAATAC 62768 32 100.0 35 ................................ ACCTAGAAAAATCCATCTATATTTTCTCTCGTCCC 62835 32 100.0 34 ................................ CGTACTTAACTACGTACCCTTTTTCGGTTAATTC 62901 32 100.0 34 ................................ CCCAATTCTCCGTCCAACGCATCACGCGCTACAT 62967 32 100.0 34 ................................ TTGTGTTATTATATTGTCTACCGTTTTAGATTCT 63033 32 100.0 34 ................................ AATTGTTTCTTGTAAAAACTGCTCGGAGTCTTCT 63099 32 100.0 34 ................................ AATCCTAAGCTAATACCTACAACTTAACAGCCTT 63165 32 100.0 33 ................................ ACCAGCAACTAGACCGTGTGGAAACTTCGTTAA 63230 32 100.0 33 ................................ CAGGTTACATCGACACCTTTATTTTGATATTTA 63295 32 100.0 36 ................................ TACTTCTTTAATATTATCTCGAAGTCTTAAATACGC 63363 32 100.0 34 ................................ CATAATATATCCGCAATCATGTTTAATTTTTGTT 63429 32 100.0 35 ................................ TCAATTAAGTCTGAAAGATCTATTGTTGCATCCGG 63496 32 100.0 37 ................................ TTCACCTTCCAGTATATCCTTGTATAACTCGTCAAAC 63565 32 100.0 35 ................................ TTTCTTGATATACGTCCTTTTCCCTATCTCTTGAC 63632 32 100.0 34 ................................ GCTCCAAAATCCAGTGTAAAACTGTCCTTGTCGA 63698 32 100.0 36 ................................ TGATAACAACGGAGAGTTTACAATTAGTGATATTAC 63766 32 100.0 35 ................................ AAGAGAGTTTAATCCTTTCAGTCTATGAGCTGTAA 63833 32 100.0 35 ................................ AATCTGAAGGTAAATCACTTCGCCAGGAAGCGGAT 63900 32 100.0 35 ................................ AATCTGAAGGTAAATCACTTCGCCAGGAAGCGGAT 63967 32 100.0 34 ................................ AAAAGCTCCGAGATCAAGTTAACTCACTAGAAGG 64033 32 100.0 34 ................................ GCGACTATTTTCCCCTAGTGGTAACGATTTCCTT 64099 32 100.0 33 ................................ ATACCATATGGTCAAACGTTAGTTTGTCAAAGA 64164 32 100.0 35 ................................ ACAACTCACAAAAGCATAAGGCCAATAATCACCAT 64231 32 100.0 34 ................................ CTTTTTTACATCCTCTTGTAAGTCCTCGTAATAC 64297 32 100.0 36 ................................ CCGACTGGGCGTTTGAGAGAGCAAAATCAGAAGGAA 64365 32 100.0 34 ................................ CATATTAATCAGTCCTTTAAAATTTTGCATAAAA 64431 32 100.0 34 ................................ CGTATATGTTTCCGAAGACTTCGCCTGTTTGATT 64497 32 100.0 37 ................................ AATTTGTCGATTAATTCAGTAGGTTCTGTGTAATTTA 64566 32 100.0 34 ................................ TTAATTGATTAAGTTTATCTAATCGTTCCTGTTG 64632 32 100.0 34 ................................ TTATTAACGCTATCCATAGCCAAACTTACGGCTT 64698 32 100.0 35 ................................ CCGCGCTTTATGCTTTAGCTAGTGCGGGTTGGGCG 64765 32 100.0 35 ................................ CTGTTAATAGACCAAATCCATCTAAAATAGAATTG 64832 32 100.0 35 ................................ TCGTGATACTATTTCTGTCGGATCTTTTTCGCTAT 64899 32 100.0 36 ................................ AAAAACTTGTGTAAATACTATAAAGAAGTTGAACAA 64967 32 100.0 35 ................................ GGGCAGAAACAAAAGTTAGAAGAAGAAGTCGATAC 65034 32 100.0 34 ................................ TTGTCCGTACCATTGATATAATTTACGTTTCTTT 65100 32 100.0 40 ................................ TTTTTTAGCAGGACTGATTTTTAATGAAGGGACACATACT 65172 32 100.0 34 ................................ AAGAAAAACTATTACATGTCAAGTGGGATGATTT 65238 32 100.0 34 ................................ ATTCATAACCCCTCCTGTTTTGATTTCTGAAACC 65304 32 100.0 33 ................................ AGTAGTATTATAACATTATAAAACATATTAGAG 65369 32 100.0 34 ................................ CGAACTCTTCTGATACATCAGCAGCGTCTGTATA 65435 32 100.0 34 ................................ ACCAAACGAGGTGGCTGTTGTTGGTGTAAATTAC 65501 32 100.0 34 ................................ CAAGTGAAGATGAAACATTTTTAGAAGAGTTACA 65567 32 100.0 33 ................................ ATATACGGTGATACATACCCACACAGGGAAAAA 65632 32 100.0 33 ................................ AATGGTAGTTTCGACAATAAAGGGTTTGAAGTA 65697 32 100.0 34 ................................ TTGAACGGGTCATTACTCGGTACTACGGGTCTGT 65763 32 100.0 35 ................................ AGACGAAGCTGTATTAAGTGGCTATGGCGACCCTA 65830 32 100.0 36 ................................ ATTGTTCCAACTGGACCTTTTAAAAGTAGACCATCA 65898 32 100.0 34 ................................ CATGCAGTCGAAACAAATGTATTTGCCTTTATAT 65964 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 60 32 100.0 35 GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Left flank : AGAGGAGATTTGGATGAGTATCCGCCTCTCTTATGGAAGTAGGTGATTTCTTTGTTAGTTGTTATTACTTATGATGTTAGTACAACAAGTATTAAAGGCACCAAGAGGTTACGAAAAGTTTCAAAAATTTGTCAAAACTATGGTGTTAGAGTTCAAAATTCAGTATTTGAATGTGTTGTTGACTCAACTCAGTTAAGAGAATTAAAGTATCAACTAATTGATATTATTGATGAAAATGAAGATAGTTTGATAATTTATCGATTAGGAGATAATTATAAAAAAAAAGTAGAACATATAGGTATAAAAGAATCACTTGATGTGGAAGGTCCACTTTTTATTTGAGTGCGAATGTGAAGTTAACAGAGAATTATAGATATTCTCGCACCACATTATTTGAAATTTGTTCCTATTATTAAAAAAATAAATCGTAAACTAATAGGAAAATAGTGATATTTGACTAAAAATGAACTCAAAAATTAGATTTTTGCTCAAATATCGCA # Right flank : TATTAATATAATCCTTTAATGACCACCACGTTTTAAGTGTAAGCGTCAAATAGCACCCACATTTCCTTAATAAAAAACTCCCATCTCATTTTAAATAATAAGTGGGAGTGTCTGTTATAACTGACTTTTGCTATTTGCTTTGAGTTTTTTGCAGCTTATAGTTTCCTGGTAGATATTCTGACCAAGGTAAAAATTTATCTAATTTTTCTTGGTCGTTGATGTCAATCTGAGGTAAGTTTTCAAACAAGAACTGTAAATAATTAAATGGATTAAGTTCATTCTCTTTGGCAGTTTCAATAATGCTATAAATTAAAGCACTAGAGTTAGCTCCTTTAGGTGTATTAGCGAACATCCAGTTCTTTCTACCTATGACAAAGGGTTTTATAGACCTTTCAGCTCTATTGTTATCTAACTCTAAGTCGCCATCTTCTAAAAATGTATTTAGTTTTTTCCACTGATTTAGGCAGTAAGAGATAGCTTTTCCAAATGCACTTTTAGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1878-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQC01000001.1 Natranaerobius trueperi strain DSM 18760 ZB100000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1877 30 100.0 36 .............................. TAGAATATCTAAAATATTATCTTCACTAATTTTAAA 1811 30 100.0 36 .............................. GTTAAAATATTTATTCATTGTTATCACTCCTTTTTA 1745 30 100.0 38 .............................. TTTGCTTCTGTCTTTCTCTTTCTTCTTTAAACCCTCGT 1677 30 100.0 35 .............................. TCATATATTTTTCGGAGGGGTAGGCAGAAAGAAGA 1612 30 100.0 37 .............................. ATTTTTCCACGCACTCTAAACTTATCAGTAGACACCT 1545 30 100.0 38 .............................. GGTCTATCTAAATACTTACCAAACGGGACTATCACACC 1477 30 100.0 37 .............................. AAATGAGTGTTATGAGGAGTTAGTAGAGGAGAGAAAA 1410 30 100.0 36 .............................. AATACAAAGACTGACGAGTTCAAGGAAGCTACTCAG 1344 30 100.0 36 .............................. CATCCCTTAATAAAGCTACAATTAGCTAACAAAGAC 1278 30 100.0 36 .............................. TAATTTTTGATGAGATACATGAGTATGAAGATTACA 1212 30 100.0 38 .............................. TGTAATGTCTCCTATTCTTTGGTCTAGTTTTTCTATTT 1144 30 100.0 35 .............................. TTTTTAATTGATAGGTCATTGATGACCTTGTTTTG 1079 30 100.0 36 .............................. ATGGGCTAAAGAAATAGCAGGAGTAGGTTTAGTGAA 1013 30 100.0 36 .............................. CAAGTATTTGCTTGATAAATACAATATTGAACCTAA 947 30 100.0 37 .............................. TTTTTTATTTTGTTTTTATATTCTTGTAATTCTTCTA 880 30 100.0 38 .............................. GGTATGTATGTCGGAAGAACGGTTTAATTCCGGAGATC 812 30 100.0 37 .............................. TCAACCGCTTTAGCGCTAAAAGTTACTTCCGTTTCTT 745 30 100.0 37 .............................. CGGCTTAATAGAAAGACTAGGAGGCGGATTTTGTACG 678 30 100.0 37 .............................. ACGCCAATTCCAACGGCAGCGTCCGGAACTATTGGTA 611 30 100.0 37 .............................. AACTATGTTGCCATTCATCGGCGTCTATACAATATTT 544 30 100.0 35 .............................. TAAACATGGCGACGCTCACGTTCGATTTCAATTAA 479 30 100.0 36 .............................. TTTTCCGATAACTCTCTAACTTTCATCGTGACCCTC 413 30 100.0 37 .............................. CGACTTTTTCAAAACTCAATAACTCTTGTACCTCGTC 346 30 100.0 38 .............................. AATTAACAACAAACTTCGGATCTATTTTAGTCATTCAT 278 30 100.0 36 .............................. TGTATATTCGCGTTAGCGCCATTATTTTGATTTCCG 212 30 100.0 36 .............................. TTAACACAAGCTCTATTCCTGCTAACTTGCCTTTGA 146 30 86.7 0 ....................T..GC....T | CT [118] ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.5 37 GTTTAATTGCATCCATAATGGAATTGAAAG # Left flank : AATGTTTCTAAATTTGTCTTAAGTAGTTGACAGATAACATAAAAAAAGAATAATATGGACTTGTAGGATTGTAAAAGTGAGTTTAAATTGAAAAACTTCTATTCTAGGTTATAGTATTTTATTAAGAGTGATGATGTAACAGTTGATATGGCTGTATTAGTTACAGGAATTAGGACTGTTCAGAAACAAGATGACCTAGGTGAATCCGAAATAAATTATGATTTTAGTATAATCTACAAATTTAGCCTGAGTATTGTATAATAGAACAGAAGGCGATGTACAGTTAGCAGCAGTTAATACCCGAGGTGCTTAATTAGGATTACGGGGGTCCCTGTAATGGTATGCACATAAATCAGCGTATAAAGTACTTCTACAATATCATGGGGTTACAAATGTAAAATCTGTGAACTTCCCGGGGAATTTACAAGATTTGAGGTAGACAGATTTATCTACCTTTGATATACCTTAAAATCCCCGGTAAAATAATGTTTTGAATAAGG # Right flank : TAGCACCCACATTGATTTAATAAAAAACTCCCATCTCATTAAATAAATAAGTGGGAGTGACTGTTATAATCAGTTTTTGCTATTTGCTTTGAGTTTTTTGCAACTTGCAGTTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTGCATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 66932-64851 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQC01000013.1 Natranaerobius trueperi strain DSM 18760 ZB100012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 66931 30 100.0 35 .............................. CGTGACAAGCTATCTTTATCTAAATACTCTTTATC 66866 30 100.0 37 .............................. GTTGAACTTCAAGAAGTTTTTTGTAGACTTCCATTTA 66799 30 100.0 35 .............................. GTGATAGAGTTGAAGGACAATGAAGGTAAAAGAAA 66734 30 100.0 37 .............................. AAAAAAGAAAGATTAATATTAATAAAGTTGAGGTAGC 66667 30 100.0 37 .............................. ACAAGTAAATGAGGATATTTAGTTAGGTCCTCTCTGA 66600 30 100.0 36 .............................. AAAAAAGAGGTGGTTCAAATTACTAAAACTCCTATT 66534 30 100.0 36 .............................. TTGTACTGATCTATTAACGTCCTTTTAACCTCTTTC 66468 30 100.0 35 .............................. AGCTAGGAATGTAATTATATTCTATTATTGTTTTT 66403 30 100.0 35 .............................. TCGGAGTCTGATTTTCTAATAAAACCACCTGCACC 66338 30 100.0 37 .............................. ATGATAATCTAAGATTTGTTCAATAAAACTCTTTTTC 66271 30 100.0 36 .............................. GAGAATTGAAGAAGAAGATGATGAAGAAGATATTAA 66205 30 100.0 36 .............................. TTAAACCATGAAAACTAATAGAGGTAACGTCCAAAC 66139 30 100.0 37 .............................. GTATGCAGGTATTAACGGGGATTCCGATGTTGTTGGT 66072 30 100.0 35 .............................. AAATATTCCTCACTTTCATTAACTTCTACAATTTC 66007 30 100.0 37 .............................. ATATATCTCTAATAGTTCTATCAGCAACATCAAACAA 65940 30 100.0 35 .............................. CTTTCTCTACTAATTCTTGTCTCTCTTCTATCCTC 65875 30 100.0 38 .............................. TTATTAAATGGTAGTGCTAGATTAAATGGAAGGTACAA 65807 30 100.0 37 .............................. GAACGAAAGTGATTATGGTTCAGATATTGTTCATAAT 65740 30 100.0 35 .............................. TTAGGAATTACTAATAAAGAGTTAATTGAACATCA 65675 30 100.0 35 .............................. TTGATGTATAAAACTTTACACATGGACGAGTAAAA 65610 30 100.0 36 .............................. GTAAGATTTTGACCACATTCCATACATGTAAAAATC 65544 30 100.0 37 .............................. CAGAATATCTAAACACTTTTAAGAATCCATTAAATAA 65477 30 100.0 35 .............................. TTGATTATGTTATGGATGGGAAATTCCCTGAAGAG 65412 30 100.0 37 .............................. TTTTTCGATGAAATTTTAAAGTTTCAGCTACTTGTGT 65345 30 100.0 37 .............................. ATTTTTCCGCGCACCCTAAATGTATCAGTAGACACCT 65278 30 100.0 36 .............................. TTTTATAAATAGGTCTTCGCCAGAATTAAGAAATAT 65212 30 100.0 39 .............................. CTAAACTACCGGCAAACCCTTTACGTCCGTTATACTCCC 65143 30 100.0 36 .............................. CTGTTTCTCTAAAATTTCTTCTAGTCTATTATTCAT 65077 30 100.0 36 .............................. CAGCATAGGGATACATTTGAGGAGAGATACAACACA 65011 30 100.0 36 .............................. AAAAATTAGCACCTATAAAATCGGCTATTGGCGAAT 64945 30 100.0 36 .............................. ATCGGAAAGTTGTTAACCTCTTCTTGATGTTTTCTT 64879 29 76.7 0 .................-.....AAA.GGA | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 99.3 36 GTTTAATTGCATCCATAATGGAATTGAAAG # Left flank : CAAAAATACAGCATAGGATTTTAAAGCGTAAAGTTTCATACCAGAGATTGATCAGATTAGAATGTTATAAATTAGTAAAGCACTTGCTAGGTGAAAAAAAGTATACTAGCTTTAAGATGTGGTGGTGACAAGGTGTATATAATTGGGATTTATGATGTGAATAAAAAAAGAGTAGGTAAAATCAAAAAATTATTTGATAGATATATGTTTTGGACACAAAATTCTGTTTTTGAAGGTAAACTCACAAAAGTTCAACTACGAGAGTTAAGAAATAAACTAGATGGTATTATTGACCCAGAAGAAGATCAAGTGATATTCTATCAATTAGGAAATCAAAAGTGGCTGAATAAGACTATTTTGGGTAAACAAGTTGATGATGATCCACCGAATTTTATATGAGTCTGTGAACTCCCCGGGGAATTTACAAGATTTGAGGTAGACAGATTTATTCACCTTTAATACGTCTTTAAATCCCCGGTAATATAGTATTTTTATTCAGG # Right flank : ATAATTACACTTATGTTAGCTGGGTTGTTCTTTGTTTCTGCTTTGATACAACATCAGTCATCGGCTATTTATATTATCTAAACTTTGATGAGGATACATCTAGAGCTGAAAAACTTAATAGAAGGCGATTATAGTCTATCTCCTTTAACATGCTCTAGCATGTTAGAGGAGATTTTTTCTTAGAGCTCTAGTTATCTTGTAATTAGACCTATGAAGTGATAAAATTATCGGTGAACTTTAAGGAGGGATTTTTGTTGGTTAAGAACCTTATATATAAAATTATTGGTGATCCAAACGATAGAGAGCTGAAAAAATTACAAAAATATGTTGATAAAATAAACGAGCTCGAACCCGAGATGAGAGCTCTTTCTGATAATGAAATACAAAATAAAACACCTGAGTTTAAAGAACGAATCGAAAATGGAGAAAGCTTAGATGATTTACTCCCAGAAGCATTTGCTGTAGTTAGAGAAGCAAGTAATAGAGTTTTAGGTATGAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTGCATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 77761-76596 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQC01000013.1 Natranaerobius trueperi strain DSM 18760 ZB100012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 77760 29 90.0 35 ....G...A.-................... AACGTTAAAGAACAGGTGGAAATTTCATCAATGTT CGC [77753] 77693 30 100.0 36 .............................. TATAGAAGAAAAATCACAAGCTAAACCACCAACCGA 77627 30 100.0 35 .............................. TAAAATTAAATCGAATACAGCGAACGGACAATATA 77562 30 100.0 38 .............................. ATGTTCCTACAGTTTTGCCAGTTCATTCCGAATCCAGC 77494 30 100.0 36 .............................. TTGGTTGTTGGATGATATTATTGATAGTACAAAGGG 77428 30 100.0 37 .............................. GAAGCATTTTATGTGAAGTTTGACCAAGCTGCACTAT 77361 30 100.0 35 .............................. AAACTATCCGAAAAAGAGAAAGAAGAAGAAATGTT 77296 30 100.0 35 .............................. ATTAGCTTCTCAAACTTCCTTATATCCTCGTCAGT 77231 30 100.0 35 .............................. TTAGATATAACCCTTGCTATCTCACAAAAACCCTC 77166 30 100.0 36 .............................. AATACTGGTTTTTGTAACTCTTCACTTGTTAAAAAT 77100 30 100.0 37 .............................. ATAGCTTTATCAATAGCATGTTCCTTTGTCATTTCTT 77033 30 100.0 36 .............................. TCTGCTTTAGCTAGCACTTTTTTCATTCTTTCTAAG 76967 30 100.0 36 .............................. ACGAACGGGACGTACTATGAGTACGCGTGTTACGGC 76901 30 100.0 36 .............................. GAGAAAGTTAATATGGGAAGCAGAGCGTTTAATTCC 76835 30 100.0 37 .............................. AAACAAAGTGGTGCTAATCGGAAGAATTTCAACGGAC 76768 30 100.0 37 .............................. TATCACCACCTCATTTGTCAGCGTTCTTCTCTTTTTA 76701 30 100.0 45 .............................. CCCGTATCCTAACTAGGGGGGACAAAATACAAACTAATTTTGAAG 76626 30 83.3 0 .C...........T.........G...G.T | G [76603] ========== ====== ====== ====== ============================== ============================================= ================== 18 30 98.5 37 GTTTAATTGCATCCATAATGGAATTGAAAG # Left flank : CTTTCTCTTAACTTTTCATATTTGTTTTCAGTTTGTGACATGAAAATTCCCCCCCTACTTAGTTAGTTGGGGGAATTATGACACAAACTAAGCTGTTTTACTATGTGGGGAT # Right flank : TTTGAGAGTTTACTAAAAAATTTAAATTATTCTTTTTTAATTAAAGTGCCTGTAATAGGCGCTTTTTTTTAGAATTTAAAATTATTTGTTAACATTTGTTTTTAAAGGAAGGAATTTGATATAAAGAGTTGAAGGTTATATATAAATATATAGTCATAGGAGAATTATTTATATGAGATTGAAGATTAATTTTAGTATAGATAAACCAGTGAATCTAACATTCAATTATCAGTACCTTTTGTCGAGTTGGGTATATAAGATTATATACAAAGGTAATTCTCGGTTAGGCAAATGGTTACATGAGAAAGGATGTTTATTTAAAGGGAAAAATTATAAGCCTATTTTATTTTCTAATGTTTTTTTTGATGAAAGTAAGGTAGTTAAATCACCTAAACACAGTTGTTTACAGGTTGATAAAGGTGGATATTTTTACTTTGATTCGTTTAGAAAAGATATTTGCTATGCTTTAATGGAGGGGACATGGCAGAAGGAAAAAGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTGCATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //