Array 1 258123-256675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJY01000034.1 Enterococcus termitis strain LMG 8895 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 258122 33 100.0 34 ................................. CCCAGAAACAGTAAGGCAAGCTAATGGGCATTTT 258055 33 100.0 37 ................................. AAAAAATGAAATAAATGTAATTATACAAACAACGGTA 257985 33 100.0 34 ................................. GCTTTTTCGGCAAGATCTCACATGCCTGGTCAAT 257918 33 100.0 34 ................................. TTAGTTAATTATAAATCGTTAACTTTGGGAGGCT 257851 33 100.0 35 ................................. AAAATTGGATAATTAAGAATGAAGTGTACATGCAG 257783 33 100.0 35 ................................. AGCAAACGCTGCATCTTGAGCATCTCTTTGCATTG 257715 33 97.0 36 ........T........................ ATTTTGAAGAGCGGGAAAATGAATTCATGAGGATAA 257646 33 100.0 35 ................................. AATAATCATGAACCCTTGTCAAAAAGATAAGGGTT 257578 33 100.0 35 ................................. TGCTACACAGCTTACCAAAGAAATTAGTTATTTAT 257510 33 100.0 34 ................................. CCCCTCCACTGGTACAACCTCACCACCGATAATC 257443 33 100.0 34 ................................. GGAGATAATCCTTTGATGCGTTGGTTTACTAACA 257376 33 100.0 35 ................................. TCAATCAATACAGCACTTATTGTTTCTGTCTCTAA 257308 33 100.0 36 ................................. TAACCACTGGCAAATCACTAGGGGTGGATAAATCGT 257239 33 100.0 35 ................................. CTCGTAACGTATTGTATCCATATTTATGGATACCT 257171 33 100.0 35 ................................. TTTTCTTCGGGTTTGTCTATATTGTGGGCGAACTC 257103 33 84.8 23 ............................TGCGC TTTGCTAATTGATCCAGATACAT Deletion [257048] 257047 33 100.0 36 ................................. AACTACTGTTGGAATAAAATCTTTCACAATGAAATC 256978 33 100.0 33 ................................. ATTTCTACAGAACCTCTATCACTCAAAGATGCA 256912 33 100.0 35 ................................. TCAATCATTTTTAGAGCATAGTTATCGTGGCTGTA 256844 33 100.0 33 ................................. TTCTTTCGATTCTTCTGTTGGTGTTTCCTTCAC 256778 33 100.0 37 ................................. ACATCATTGATCGTTTCTACAAATGTATTTACGACCT 256708 33 87.9 0 ..........A............CTT....... | A [256686] ========== ====== ====== ====== ================================= ===================================== ================== 22 33 98.6 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTATACGAAATATGGAGATGGCGGAGCAGATATTTTACCGTTATTTCGTTTGAATAAACGCCAAGGAAAAGCACTTTTGAAAGAACTTGGAGCTCCTTCTGCGCTTTATTTGAAGGTACCAACAGCTGATCTTGAAGATGATAAACCACTTGTGGCGGACGAAGTAGCTTTAGGTGTAACCTATGATGATATTGATGATTATGTTGAAGGAAAAGAAGTTTCTGAACAAGCTCGTGAAACGATTGAAGGCTGGTATAAAAAGACACAGCATAAACGTCATATGCCCATTTCAATCTTTGATGATTTTTGGAAGTAATCCTCCATTAAAAGTTCTTTCGTTTGGTGCGAACCCTAAGTGCACATGAAAACACTGGGGGATTCGCACCAAAAAAAGAGCAAAAAGACGTTGGTAAAAGGCGTTTTTCTCATTTTTTTTTAATGTATGTTCTTTATTAAAGTGATTTTCGATGATTATGTAATGTATTTTTGTCAAAATCATG # Right flank : TCTGTATCAATGATCGATATTTCTTCACCTTTTGATTTAGCTCTCTTTAAGTCAACCCAAGAAAGACGAATTCTCTCGTCTTTCTTTTTTTGTTCAATAATCATTTTTTTGTTCGAATGGTTAAAAAAAGTGTAAACTTGATCTTATAAACAGCAATTATCTTAAAAGTAATCTACAATTAATTTAACTATACACAAAGAAAGTGAATTGGGTGAACTATGAAAAAATTGTTTAGAAAAAAAAGGAACATCGACAACGAAACGTTTTTTTCATCGGAGGAAAAGCAACAAACTGTAACGAATGAAACAATTCGAATTCCAGATACAATCAAAGGACTATCTGATCAAGAAGTGCAGCAGTTGTATGCCGAAGGAAAATATAATAAAGAAGTCGAGGATCTGTCTAGAACGACCAAACAAATTATTTTAGATAATTCTTTGACCCTATTCAATTTTATCAACTTATTTTTAGCGGTAGCTGTTTTTGCTGTAGGTTATCCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55344-56727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJY01000023.1 Enterococcus termitis strain LMG 8895 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 55344 33 100.0 35 ................................. AAAAGATATTAGATATTTTAGACGGTCTTATTGAT 55412 33 100.0 35 ................................. AACATCAAAAAAATTCCCATTGTATGCAGAGAAAC 55480 33 100.0 36 ................................. TCAATCTCGCTGAGAACGAGGAGAAGGACGACGAGC 55549 33 100.0 36 ................................. AAAAAACCAAGATTGGAACATTTGAGCAATCTGATA 55618 33 100.0 33 ................................. CTCAAGGTAGACCTCGGTTTGCTAGAAGAGGGA 55684 33 100.0 35 ................................. CCGTTCATGCACATTCTTGATCCAAGTTTCCATAC 55752 33 100.0 36 ................................. CTCAATCACTTCAACCAATCCTCTAGCGACAAGCTT 55821 33 100.0 34 ................................. ACCAACACATATCCATCACGACTGATTCTTTCTG 55888 33 100.0 37 ................................. TTTTTTGGTACCTGCAGATATGACTTGCGAATAACGC 55958 33 100.0 33 ................................. TATTTTGAAGGGTTGGACGATATTCTTATCGCA 56024 33 100.0 33 ................................. AATCTGTGAACGTTCCAGTGAATAAATTAATTA 56090 33 100.0 33 ................................. TTAGAAGATTATCCCATTTTAATTTATGATGAA 56156 33 100.0 33 ................................. ACTGTTTCGATCACTTGGGCTTGAGTTGCTTCA 56222 33 100.0 35 ................................. CTCATTTGTCGAATCTAACCAAGATGCCGCTAAAA 56290 33 100.0 34 ................................. GTCTTTCATGCGCTCGCGTAGTCTTTTCATCTCT 56357 33 100.0 34 ................................. TCTGTATACGTTGACAGGTCCAAATCTTCTTTGG 56424 33 100.0 34 ................................. AAAAGAAATATGTTTGCATTGTATGGGTCTAGCT 56491 33 100.0 34 ................................. CTGTTATCAAAAAATGATAATGTCGTTTCATTTC 56558 33 100.0 36 ................................. GATCGTGCGGAGCAGTTTGCTGCTAAAGGGCGTAAG 56627 33 90.9 35 A.................T.......C...... GGTGTTATTAGTGGGCAAATTCTTTCCGTTCTTTT 56695 33 84.8 0 ......................ACAT...T... | ========== ====== ====== ====== ================================= ===================================== ================== 21 33 98.8 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AGCGTTTTGAATTTCTACAAAAAACATGGGGAAAAGAAGAGGCGCAATTGTCGCTTGATTTCGAAGAACCACTTTTAGTTGCTGAAGAAAATCCAGAGATTTTCGAAGAGTATGACCAAGTCGTTTGGCAAAAGCGAGCTCTAGGAGAAGTAACGCATATTTTCAGTCACTTAAAATGGCATGTGTTAGTTTTTTATGGACGACAAACAGGGACGTTGACCACTAATGAAAATCAAATTTGGTCAACAAAAGAAGAATTTTCAAGTTATGTTTTTCCAAAACCGCAACAAAAAATGGTAGAACTTTACAAGAAAGAATCAAGAATAGAAGAATAATTTTTGGTGCGAACCCCAAGTGCACATAAAATCGCTAGGGGATTCGCACCAAAATTGCGGTCAATTTAGTAGTAAAACGAGGCTTTTTCTAATTCTATTTTAATGTTATACTGTTTTAAGAAGTGAAATTGGGAAGATATGTCATGTATTTTGACCAAATTCACA # Right flank : TGCTATAGCCAATTGAGATTTAACTTCCTACCTTTATACTTTAGTTTTTGAACATATTAATATAGACATATCACCTTCTCCTGATTTTTTAAAGAATGAAATAATCATAGTTGGTTTTAACTTCTTTATAGCACTATTAGAATTATTAAACACAAAATCTTCTAGCACATTATTGATAAATCCTGTATCTTCATTGATATCCTGTATTTGGCAAAATACTTCACCGTCACCTACAAGTTCAAATTTGTATTCACCATTTATTGAATCTGGAACGAAAAAGTTACCATAACTATTTTTCAGATGAATAGTTCCCTCTTCTTCAACAGGTAGATATTTTTCTTTTGAGGGTACTAGGTAAACTGAACTTTTTTTAGGGGTTTGAAATTTATTCGTATCGTAGAATGCTTGATTACGTACAATATCTTTTTTATTTAAATTTTCATTACCTAAAAATAATTCTTTACTACTTGTTTCAGATACATCGTAATATCCTGATGACA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 61199-61851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJY01000023.1 Enterococcus termitis strain LMG 8895 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 61199 33 100.0 37 ................................. ACTAAGCATATAGGAATTGATTTTTCAGAAAGCACAG 61269 33 100.0 37 ................................. TCTTATTCGCCAAAATAAAGATAGAAGGGAGGGACTC 61339 33 100.0 37 ................................. CAGTTTATATAGCTTAGGTGGTGAGATCGTGGCTAGG 61409 33 100.0 35 ................................. AACTAATTTTCCTTGGTTTCATTATTCTTTTTTTC 61477 33 100.0 37 ................................. TCTGCTTGCTTTGTTAAATCTGTTTTTGCCACCTACT 61547 33 100.0 33 ................................. TCGATCCTAAGCCATTACCTAAGAAAGCTGAAC 61613 33 100.0 34 ................................. AACGATTTTGTTAACATCATCAAAAATATTAGTA 61680 33 100.0 38 ................................. TCTTAATAAAAGAGTGCTAACTTACAAAATTATTGACA 61751 33 100.0 35 ................................. AGAGTGCTAATGTCCAGCTATATAACCGATTAATG 61819 33 90.9 0 .......................AA.......C | ========== ====== ====== ====== ================================= ====================================== ================== 10 33 99.1 36 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : ATTTTATGGTCAATTTTATTTTTCATTTATTTCGAAATAATTTAAAATATAAAAATTGATTCTTTATCATTTACTCCCACAAGCTTCGGGGACAAATAATATAAGTTTACGAGAAGCTAAGTTTGAGATCTTAGTCTCTTTAATAAAGTGTCTTTCTCAGAGACTAGACCTAAGATAAAAAGTCTAAATCTAAAACAGGAAAATATGGAGGAACAGTTAATGTTGAAAAGATAGAATCAATATGTAAGTGATTAAAAAATATTCAGTTAGGTGGAAATACAACTTTTGGTTGTGGTAAAATAAATATAACTATTATTTAAAGATATAGGATTAAGATTTTGGTGCGAACCCTAAGTGCACATAAAATCTCTAGGGGATTCGCACCAAAATTTTGCTTATTTCAGTAGTAAAAAACAGTTTTTTCTAATTATATTTTAATGTTATGCTGTTTTAAGAAGTGAGATGGGGAAGATATGTCATGTATTTTGACCAAATTCACA # Right flank : CCATATTTAGATAAAGTATAAATAGATATGCTCGTAGATTGAAATACTAATTCTGTCGAAGAGTCCATTCTATTTTTACTGCCCAGTTCCATTTCACCCTCAAAAAAACAAAATAGGTTAATATTTCTAATAGATATTTCTCTTTGTCATGAGAAATAAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTGAAATGATATCGGTGTAATGAACACCCAAACGAAGCGTAATCAGCTTTGATGCGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGCGAGTATTCACTGATTGGCGTAAACGATCATACTTTGGTCACAGAGTCTGATGGTCGCCGATGGGTTACTCGAGAACCAGCAATCGTTTATTTCCATAAAAAATACTGGTTCAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10483-11790 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJY01000045.1 Enterococcus termitis strain LMG 8895 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 10483 33 100.0 33 ................................. TGACGTTACTGTAGAGAACGATGAAACATTATT 10549 33 100.0 35 ................................. TCTAAAAACTTTAAATAAAAATCCAGTGTAAGCCC 10617 33 100.0 32 ................................. CAACTACAAAGCGTGAACTAGCTTTACTAGCA 10682 33 100.0 35 ................................. TTAATTTCGAATGACACATTACAACTCGGAGCTCG 10750 33 100.0 33 ................................. TTTACGGGAGGGAAAGACCAAAAATTATAAATT 10816 33 100.0 36 ................................. ATTTATTTCTCCTCCTCCACTGGCTCAATCCCCATC 10885 33 100.0 35 ................................. TTATTATTTTAACAGTGGTGTGCAGTGCGATTATA 10953 33 100.0 34 ................................. TCCTAGTCTAGAATATGAGAAATGCTATCTGCAT 11020 33 100.0 35 ................................. GCATCAACTCCATAACCACCATACCTAGCGATTAT 11088 33 100.0 34 ................................. CAAATATAAGACTTCGCAAGTCCTGTGACATAAT 11155 33 100.0 36 ................................. TAGTCTAGTTGGCTTGTTAGGTGGTCCAGTGGTCGT 11224 33 100.0 34 ................................. GCGAATGCCAATCTTTTTAAACTTTAATAGGAGG 11291 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11358 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11425 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11492 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11559 33 100.0 33 ................................. TTTAATAGTCACAAAATTAAAATAAAGACAAAT 11625 33 100.0 34 ................................. CCAGTGCCAGCAGTACTGGCTATAATTACGGCGT 11692 33 97.0 33 ..........A...................... AGGTGGTGTACGTATGGCGTACGTCAATCTGGA 11758 33 81.8 0 ...............A.......AA.....TTC | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 98.9 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : CGCCATTTTTATGGAAGTAGGTGAGAAGCATCTTAGTATTGATTACCTATGATGTTGCAACAAGTTCTGAAAATGGTCCGCGCCGTTTGCGTAAAGTAGCGAAAAAATGTCAGGACTATGGTCAACGAGTGCAAAATTCTGTTTTTGAATGTGTTGTGGATGCGACAGAATTGACGAAACTAAAAAAAGAACTCATTGATTTGATCGATGAAGAAGTAGATAGTCTGCGAATTTATCGTTTAGGAAACAACTATCAAAATAAAATCGAACATATTGGCGCAAAGGAAAGCTTTGATGTAGAAGCACCGTTAATCTTTTAAAGATAAATTTGGTGCGAACCCCAAGTGCACATGAAAACACTGGGGGATTCGCACCAAATTTAGGGTAGTTTTAACGCTTAATCAAGCTTTTTTCTAATTGAAATTTAATGTAGTGGTATAATATACTAGTAATTAGGTGAAATAGTTAAGAAATGTATAGTTAATTTGACTAATTTCACA # Right flank : CGATGGTTCTAATCACTTCTACCACTTTTTATATTAATTAAATTTCAAACAAAACAGGAGAATCAAATGCGTTATTTATGGTTATCTATAATCTTCTTGGTCTTACTTTCTTTTCATCGAGGATGGTATGTTCTTTTAAATAAAAAAATGAAAACTAATTATTTTTTAGTGAAAATCATCTTATCTAGCTTTTTAGCCTGTTTGGCTGTTATTCTTTTTGTGATGCTTTTATTCGGCAGTTTTATTGCCCTCTATATTCAGGACATAAATATGTTGGCAGGAATAATATACGGAATCACGTTATTGAGTTTGAAAATCTATTTACTATATATCATTTTATCCGTTTTAGTGTGCAGCCTTGTAGAAATGAAAAATAAGAGAAAAACTACAAGAAGCAACAAGTAGTTATTGTGGCTGGTACATTGATGATGTAGCCAGCTTCTTCTTATCTGCCAGCATTAAAATGAAGATTTTTTCATGATGATTTGATTGACCTCTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //