Array 1 32533-32277 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259079.1 Porphyromonas gingivalis F0569 Scaffold672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 32532 37 89.2 35 NNNN................................. CCCATACTCATCTCCATTGCTTTATGGGGCATGAT 32460 37 100.0 36 ..................................... AAACAAGTGGGGAATCCGGGAGGAAGGAGAATTAAC 32387 37 100.0 37 ..................................... ATGTTGAAATGCATTACACAGGAGGCAAGGAAGCAAG 32313 37 89.2 0 .................................NNNN | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 94.6 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : GCGGTGGTGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAATTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGTTGCACAACTCGCCTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACAAAGGAGGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATAAGTGTCTTAATAGCCTTACGGACTGTGTATGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATAGCCTTACGGACTGTGTATGTATAGTGAGTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGACAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACTTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGGGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 36910-37136 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259080.1 Porphyromonas gingivalis F0569 Scaffold677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 36910 29 100.0 37 ............................. AACAAGACGTGTCGGCGGACGAGCTAATCGACTGTTG 36976 29 100.0 37 ............................. AACGGATATCACTGATTATTACTTGGATGAGGAGTTG 37042 29 100.0 37 ............................. AACAGGAGGCAAGATGTTTTACTTCGACAAGAAGTTG 37108 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 TGTGTACCCTTCGAATAGAGGGTAGATCC # Left flank : GGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCATGTTGTGTGTACCCTTCGAATAGAGGGTAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTACCCTTCGAATAGAGGGTAGATCCAACACACCCACTACTTATGAATTAACAGACTTTGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACAGATCGAAACGGGTATGCCTTACGTCTATGGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACGGATATCACTGATTATTACTTGGATGAGGAGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACATTTATTTGTTATTAATTATGTTCTGAAATGTTGTGTGTACCCTTCGAATAGAGGGTAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTACCCTTCGAATAGAGGGTAGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 37299-37528 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259080.1 Porphyromonas gingivalis F0569 Scaffold677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 37299 32 100.0 34 ................................ CAACAGATCGAAACGGGTATGCCTTACGTCTATG 37365 32 100.0 34 ................................ CAACGGATATCACTGATTATTACTTGGATGAGGA 37431 32 100.0 34 ................................ CAACATTTATTTGTTATTAATTATGTTCTGAAAT 37497 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTTGTGTGTACCCTTCGAATAGAGGGTAGATC # Left flank : GAGGGTAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTACCCTTCGAATAGAGGGTAGATCCAACAAGACGTGTCGGCGGACGAGCTAATCGACTGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACGGATATCACTGATTATTACTTGGATGAGGAGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACAGGAGGCAAGATGTTTTACTTCGACAAGAAGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTACCCTTCGAATAGAGGGTAGATCCAACACACCCACTACTTATGAATTAACAGACTTT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTACCCTTCGAATAGAGGGTAGATCCAACCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCAAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 102-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 102 30 96.7 33 A............................. CCTAAGCGGTTCAGGTGTTCTACACGAGCGCTA 165 30 100.0 36 .............................. TGTAGTTGCCCGCCTCCTTTTGGGATTCTGTAGGAT 231 30 100.0 36 .............................. TAAACCTTTTACGCTCTAAGCCAATAACATAAACTG 297 30 100.0 37 .............................. TAGATACAATTATTATATGAGAACTTTTGCAACCTTT 364 30 96.7 37 .....T........................ TCTTAGTTGTTGTTCTTTTTTTTAATCAAACAAATCA 431 30 100.0 36 .............................. CTGTTTGCAACTGCAGAGGCGGGTACGCGCAGGGTT 497 30 100.0 37 .............................. GCAGAGGCGCGCATCTCTCGCTTAGAGTCGATTCGCT 564 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATACA # Right flank : TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAATTCCTGTATGGTGCAATTGAAATCTTGTCCTTCTTCATTACTCCCTTGATGATATCCTGTTTTAATTCCTGTATGGTGCAATTGAAATCTAAGCTCCGTAAGAAGAAAGCCGCCTGTGCAATCGGTTTTAATTCCTGTATGGTGCAATTGAAATTTAGTCTCAAAATAGGAGGAACTAACTCTTGTGGTGTTTTAATTCCTGTATGGTGCAATTGAAATCTGTCGAAGATGTGGCGGATCGGCTGGCCGTAGAGTGTTTTAATTCCTGTATGGTGCAATTGAAATCCCCCATTTCGGGGAAACTTTGCTTGTCGAAAATAGTTTTAATTCCTGTATGGTGCAATTGAAATTTCCAATATGTCCGATAAGACCAAATGCCGATCTGCGTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 2 1553-1779 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1553 30 100.0 36 .............................. ACCGCTATCGTCGTATAGCCACCGCATATTAGCTAT 1619 30 100.0 36 .............................. TTCTTGCACGGTCAATACCAGACAGGCGCGAAGCTG 1685 30 100.0 35 .............................. ACCCAGTTCACGCAGGTGCTCTCGAACGTAAATCA 1750 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTTCCAATATGTCCGATAAGACCAAATGCCGATCTGCGTTTTAATTCCTGTATGGTGCAATTGAAATATTCTGTGCAGACACGAGCGCACTATTTATCTCTACGTTTTAATTCCTGTATGGTGCAATTGAAATTATATAACGGGGTTAAATTCGCGTATTTGCATTTTCAGTTTTAATTCCTGTATGGTGCAATTGAAATGGTACGCCTCCCTGTCTTGTTTCGCTTTTTCGGCAGTTTTAATTCCTGTATGGTGCAATTGAAATCAGGGCGGCATGACCCTGCCCGCCGCCCCTTTCAAGGTTTTAATTCCTGTATGGTGCAATTGAAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCTCCTTCTTGTCGAAGTCGGTGGACATGAGTCCGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGTTTTAATTCCTGTATGGTGCAATTGAAATCTCTATAAGAGCATTATCGAGGGCGGAAAGTTGTTGTTTTAATTCCTGTATGGTGCAATTGAAATCGGCTTCTGCGAATGATTTTTGATCTAATCATTGTGGTTTTAATTCCTGTATGGTGCAATTGAAATTGTTCAACGACCGCGCGCTTTTGACGCAGGCAGTCTGTTTTAATTCCTGTATGGTGCAATTGAAATCTTTCTGAAACAAAAAAAATCGCGTTTTTTGTTGTGGTTTTAATTCCTGTATGGTGCAATTGAAATCCTTTTTCATTTATTCAATCTATAGTTAAACACTTTGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 1881-2173 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1881 30 100.0 35 .............................. CTCTATAAGAGCATTATCGAGGGCGGAAAGTTGTT 1946 30 100.0 36 .............................. CGGCTTCTGCGAATGATTTTTGATCTAATCATTGTG 2012 30 100.0 36 .............................. TGTTCAACGACCGCGCGCTTTTGACGCAGGCAGTCT 2078 30 100.0 36 .............................. CTTTCTGAAACAAAAAAAATCGCGTTTTTTGTTGTG 2144 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCTCCTTCTTGTCGAAGTCGGTGGACATGAGTCCGCGTTTTAATTCCTGTATGGTGCAATTGAAATACCGCTATCGTCGTATAGCCACCGCATATTAGCTATGTTTTAATTCCTGTATGGTGCAATTGAAATTTCTTGCACGGTCAATACCAGACAGGCGCGAAGCTGGTTTTAATTCCTGTATGGTGCAATTGAAATACCCAGTTCACGCAGGTGCTCTCGAACGTAAATCAGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA # Right flank : TCCTTTTTCATTTATTCAATCTATAGTTAAACACTTTGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTAGTTGCTGTTTTGAGAAACAAAAACCATGTCGTTTTAATTCCTGTATGGTGCAATTGAAATCTTTCTATCTCGCCGATTCGCTTTAGCTCTATATTTGTTTTAATTCCTGTATGGTGCAATTGAAATATAGCCCTTTCTTTTTCCCGTCTGGTCTTATTCTGTTTTAATTCCTGTATGGTGCAATTGAAATACCCGAGCGCGCAGCCCGAGCGCGCGTATAAGGCTGGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 4 2405-2630 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2405 30 100.0 36 .............................. CTTTCTATCTCGCCGATTCGCTTTAGCTCTATATTT 2471 30 100.0 34 .............................. ATAGCCCTTTCTTTTTCCCGTCTGGTCTTATTCT 2535 30 100.0 36 .............................. ACCCGAGCGCGCAGCCCGAGCGCGCGTATAAGGCTG 2601 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGAAATCTCTATAAGAGCATTATCGAGGGCGGAAAGTTGTTGTTTTAATTCCTGTATGGTGCAATTGAAATCGGCTTCTGCGAATGATTTTTGATCTAATCATTGTGGTTTTAATTCCTGTATGGTGCAATTGAAATTGTTCAACGACCGCGCGCTTTTGACGCAGGCAGTCTGTTTTAATTCCTGTATGGTGCAATTGAAATCTTTCTGAAACAAAAAAAATCGCGTTTTTTGTTGTGGTTTTAATTCCTGTATGGTGCAATTGAAATCCTTTTTCATTTATTCAATCTATAGTTAAACACTTTGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTAGTTGCTGTTTTGAGAAACAAAAACCATGTC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTTTTAATTCCTGTATGGTGCAATTGAAATCGGAGTTTGTGAAACAACTTATCTCGCCTTTGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTTTGATGCCACAGATGTTTCGAAGCCCTTGAGTTTTAATTCCTGTATGGTGCAATTGAAATAACCTTTCGCATTCAAGACAACTTCTATAGTAGATGTTTTAATTCCTGTATGGTGCAATTGAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTAATTCCTGTATGGTGCAATTGAAATTTACGTAATGATAGACGATAGAGATTGCGCAGATGTTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 5 2799-2958 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 2799 30 100.0 35 .............................. TTTGTTTGATGCCACAGATGTTTCGAAGCCCTTGA 2864 30 100.0 35 .............................. AACCTTTCGCATTCAAGACAACTTCTATAGTAGAT 2929 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTAGTTGCTGTTTTGAGAAACAAAAACCATGTCGTTTTAATTCCTGTATGGTGCAATTGAAATCTTTCTATCTCGCCGATTCGCTTTAGCTCTATATTTGTTTTAATTCCTGTATGGTGCAATTGAAATATAGCCCTTTCTTTTTCCCGTCTGGTCTTATTCTGTTTTAATTCCTGTATGGTGCAATTGAAATACCCGAGCGCGCAGCCCGAGCGCGCGTATAAGGCTGGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTTTTAATTCCTGTATGGTGCAATTGAAATCGGAGTTTGTGAAACAACTTATCTCGCCTTTGAGA # Right flank : TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTAATTCCTGTATGGTGCAATTGAAATTTACGTAATGATAGACGATAGAGATTGCGCAGATGTTTTAATTCCTGTATGGTGCAATTGAAATAACATGCCTTTATTTATAATTTTAACACTTTCAATAGTTTTAATTCCTGTATGGTGCAATTGAAATTCCGCAGACAGGGCGGAGTTGTGCAATATGCCGATCGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATTTTTGATGCGACAACGCTTATTCGCAAGAGGTTGCGTTTTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 6 3062-3221 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3062 30 100.0 34 .............................. TTACGTAATGATAGACGATAGAGATTGCGCAGAT 3126 30 100.0 36 .............................. AACATGCCTTTATTTATAATTTTAACACTTTCAATA 3192 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AATACCCGAGCGCGCAGCCCGAGCGCGCGTATAAGGCTGGTTTTAATTCCTGTATGGTGCAATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTTTTAATTCCTGTATGGTGCAATTGAAATCGGAGTTTGTGAAACAACTTATCTCGCCTTTGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTTTGATGCCACAGATGTTTCGAAGCCCTTGAGTTTTAATTCCTGTATGGTGCAATTGAAATAACCTTTCGCATTCAAGACAACTTCTATAGTAGATGTTTTAATTCCTGTATGGTGCAATTGAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : TTCCGCAGACAGGGCGGAGTTGTGCAATATGCCGATCGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATTTTTGATGCGACAACGCTTATTCGCAAGAGGTTGCGTTTTAATTCCTGTATGGTGCAATTGAAATAGCCGTATTCCAATCGACGAGGAGACAATTCGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTCCGCGTGGGGGCAGTATAAAGGGGAGGCCGAGTTTTAATTCCTGTATGGTGCAATTGAAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 7 3782-4009 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3782 30 100.0 36 .............................. TTATTATGGTGGATATATCACTGAAGCCGGAAGACA 3848 30 100.0 36 .............................. CTTCTTTACTCTATTTTATTTTCATACTCATGACCG 3914 30 100.0 36 .............................. AGCGCGCATGTTCCGAGTTCCGTCTCGAAAAAATAT 3980 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATTTTTGATGCGACAACGCTTATTCGCAAGAGGTTGCGTTTTAATTCCTGTATGGTGCAATTGAAATAGCCGTATTCCAATCGACGAGGAGACAATTCGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGTCCGCGTGGGGGCAGTATAAAGGGGAGGCCGAGTTTTAATTCCTGTATGGTGCAATTGAAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATTCAAGAAAGAGCTGTCAGCGCGCAAGAAACGTCTGA # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTAATTCCTGTATGGTGCAATTGAAATCCGAAAACATTGCCACGCCGATAACGAACGTTTCAGGTTTTAATTCCTGTATGGTGCAATTGAAATTTCGTGCCTATAGATTATCATAATTTCCCCGCAATGTTTTAATTCCTGTATGGTGCAATTGAAATATCGTACTGATAATTACGCTGCAAGGTCAAACGGGTTTTAATTCCTGTATGGTGCAATTGAAATACAGTGGAACCACTTTTCCGCTGCATCTTCTTGTCCCGTTTTAATTCCTGTATGGTGCAATTGAAATAAATGATTTACTGTCAAGTAAAAGCGCGCCTTGATAGTTTTAATTCCTGTATGGTGCAATTGAAATGGATTCTCCTCAGAGATGAAATCCGGATTATCAAAAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 8 4179-4602 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4179 30 100.0 35 .............................. TTCGTGCCTATAGATTATCATAATTTCCCCGCAAT 4244 30 100.0 34 .............................. ATCGTACTGATAATTACGCTGCAAGGTCAAACGG 4308 30 100.0 37 .............................. ACAGTGGAACCACTTTTCCGCTGCATCTTCTTGTCCC 4375 30 100.0 36 .............................. AAATGATTTACTGTCAAGTAAAAGCGCGCCTTGATA 4441 30 100.0 36 .............................. GGATTCTCCTCAGAGATGAAATCCGGATTATCAAAA 4507 30 100.0 36 .............................. CTCCCGTTCTATCTCTATCTTCATACGCACGAGTTC 4573 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATTCAAGAAAGAGCTGTCAGCGCGCAAGAAACGTCTGAGTTTTAATTCCTGTATGGTGCAATTGAAATTTATTATGGTGGATATATCACTGAAGCCGGAAGACAGTTTTAATTCCTGTATGGTGCAATTGAAATCTTCTTTACTCTATTTTATTTTCATACTCATGACCGGTTTTAATTCCTGTATGGTGCAATTGAAATAGCGCGCATGTTCCGAGTTCCGTCTCGAAAAAATATGTTTTAATTCCTGTATGGTGCAATTGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTAATTCCTGTATGGTGCAATTGAAATCCGAAAACATTGCCACGCCGATAACGAACGTTTCAG # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATCGAACTTGACAAGACGGCAGTAAGCAAGATCAAGAGGTTTTAATTCCTGTATGGTGCAATTGAAATCCATGTCCACCCGCTCGATGACGCCGCCGCCCGGGCGTTTTAATTCCTGTATGGTGCAATTGAAATATCGCGGCGAAGGAGGAGGCGGAGTACCGCACAAGTGTTTTAATTCCTGTATGGTGCAATTGAAATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATAACTGGGCTTTGATAAGGTTGTCGTCGTCGAAACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 9 5103-5792 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5103 30 100.0 37 .............................. ACGCGAATTTAACCCCGTTATATACCCATACAAGCTT 5170 30 100.0 34 .............................. TCGCAGGCGAAAACAAATAAGTCGCGTATGATTG 5234 30 100.0 37 .............................. TCATATTCCTTGAAAAATTTTTTAGAACAATAGCCAG 5301 30 100.0 36 .............................. AGGCAAGGGCGTTATGGTTAGCCCCGATCGTGACGA 5367 30 100.0 38 .............................. TGGTATAAGATCAACGAAATGCTGCAGCGCATGCTCAA 5435 30 100.0 35 .............................. GCGCGCCTACTTTTGAGGCGTAAAACAGTACGGAA 5500 30 100.0 35 .............................. CGCTGAGCGAGGGCGAGGTCTTCACAGAGATGCAC 5565 30 100.0 36 .............................. AGGTGATGTTATGCTCAAATGAAATGTGGAGTCCAT 5631 30 100.0 36 .............................. CGGATATTAGTTTCTGTAGTTTTTCTTCTTCTTTTC 5697 30 100.0 36 .............................. CGTCCATAGAAACTTCTTGAATTAGTTGAAGAAGTT 5763 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATCGAACTTGACAAGACGGCAGTAAGCAAGATCAAGAGGTTTTAATTCCTGTATGGTGCAATTGAAATCCATGTCCACCCGCTCGATGACGCCGCCGCCCGGGCGTTTTAATTCCTGTATGGTGCAATTGAAATATCGCGGCGAAGGAGGAGGCGGAGTACCGCACAAGTGTTTTAATTCCTGTATGGTGCAATTGAAATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATAACTGGGCTTTGATAAGGTTGTCGTCGTCGAAACGGA # Right flank : TGCGCAGCCGGGAAGGGATGCGAAAAATAAGTCTGATGTTTTAATTCCTGTATGGTGCAATTGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAATTCCTGTATGGTGCAATTGAAATTAGCGGAAGAGTTGGGGCTGACGGGGGTCGAACTTATGTTTTAATTCCTGTATGGTGCAATTGAAATTACCTCCTTGAAGACTGTATCCCCAGCCATGTACAGTTTTAATTCCTGTATGGTGCAATTGAAATGGCATATTCCCCATAACATCTTCTATAGGCTTTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATACCCTTCAGGCAATGAAGTTGGGAAGTTCATAGTAAGTTTTAATTCCTGTATGGTGCAATTGAAATAAGACAACTTCTATAGTAGATTGGAAGATATCCATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 10 5961-6517 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5961 30 100.0 37 .............................. TAGCGGAAGAGTTGGGGCTGACGGGGGTCGAACTTAT 6028 30 100.0 35 .............................. TACCTCCTTGAAGACTGTATCCCCAGCCATGTACA 6093 30 100.0 36 .............................. GGCATATTCCCCATAACATCTTCTATAGGCTTTTTA 6159 30 100.0 36 .............................. ACCCTTCAGGCAATGAAGTTGGGAAGTTCATAGTAA 6225 30 100.0 35 .............................. AAGACAACTTCTATAGTAGATTGGAAGATATCCAT 6290 30 100.0 36 .............................. TTTGCCGACCAAACCACCGTGGCCGCGATGGTGCAG 6356 30 100.0 36 .............................. AAGCTCTAAGGGCAAGCTCAATCTTGTGTGTAATTC 6422 30 100.0 36 .............................. GAATACTGCATTCGAATCTCGCGAGTCGCATTGTTT 6488 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAATGCGCGCCTACTTTTGAGGCGTAAAACAGTACGGAAGTTTTAATTCCTGTATGGTGCAATTGAAATCGCTGAGCGAGGGCGAGGTCTTCACAGAGATGCACGTTTTAATTCCTGTATGGTGCAATTGAAATAGGTGATGTTATGCTCAAATGAAATGTGGAGTCCATGTTTTAATTCCTGTATGGTGCAATTGAAATCGGATATTAGTTTCTGTAGTTTTTCTTCTTCTTTTCGTTTTAATTCCTGTATGGTGCAATTGAAATCGTCCATAGAAACTTCTTGAATTAGTTGAAGAAGTTGTTTTAATTCCTGTATGGTGCAATTGAAATGCGCAGCCGGGAAGGGATGCGAAAAATAAGTCTGATGTTTTAATTCCTGTATGGTGCAATTGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : TTAGACTTTACACGTTGCTGGTATTCGCCGACTTTCAGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTTTTAATTCCTGTATGGTGCAATTGAAATACGGGGGGGGGGGAAGCGGCCTGTTTATAGACGACTTGTTTTAATTCCTGTATGGTGCAATTGAAATCAAAAAGGGGAAGTAAGCCCCTCCATCCTCGACCGTAGTTTTAATTCCTGTATGGTGCAATTGAAATGTCGAATGTCCACGACGTTAACATTATAGCCCTCGAGTTTTAATTCCTGTATGGTGCAATTGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 11 7019-7444 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7019 30 100.0 37 .............................. TGCGACGTCATCCAGCTTCAGATTTGCTGCCTTACAG 7086 30 100.0 36 .............................. ACCGGTACGCTCTACATTTCCTCCTGCACTTGAGTA 7152 30 100.0 36 .............................. ACGACGAACTCGTCAAGAACCCCCGCCGCGTCGATC 7218 30 100.0 36 .............................. CGAATTGTCGCCGCGGCATCCGTATCGTCTGCGAGA 7284 30 100.0 37 .............................. GCAATTTCCTTTGCGATGCCGATTCGTTCCTCCCCTT 7351 30 100.0 34 .............................. CAAGAAGTCTATTACAGACTATTACACGTCTTAT 7415 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AGACTTTACACGTTGCTGGTATTCGCCGACTTTCAGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTTTTAATTCCTGTATGGTGCAATTGAAATACGGGGGGGGGGGAAGCGGCCTGTTTATAGACGACTTGTTTTAATTCCTGTATGGTGCAATTGAAATCAAAAAGGGGAAGTAAGCCCCTCCATCCTCGACCGTAGTTTTAATTCCTGTATGGTGCAATTGAAATGTCGAATGTCCACGACGTTAACATTATAGCCCTCGAGTTTTAATTCCTGTATGGTGCAATTGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA # Right flank : TTCGAACCAAAAACTGAAGTTAATAACGTTAAACTTGAGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCTCCAAGAGCCCATCTACGATATAGGAGCTGCTCTCGTTTTAATTCCTGTATGGTGCAATTGAAATCATTGATAAAAAGTCTTTAAAAAGTAATAATTTGGAGTTTTAATTCCTGTATGGTGCAATTGAAATAAAGATCCATTAGTAACGTTTGATGAGGAGCTCGGAGTTTTAATTCCTGTATGGTGCAATTGAAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 12 7677-7838 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 7677 30 100.0 36 .............................. CATTGATAAAAAGTCTTTAAAAAGTAATAATTTGGA 7743 30 100.0 36 .............................. AAAGATCCATTAGTAACGTTTGATGAGGAGCTCGGA 7809 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GAAATACGACGAACTCGTCAAGAACCCCCGCCGCGTCGATCGTTTTAATTCCTGTATGGTGCAATTGAAATCGAATTGTCGCCGCGGCATCCGTATCGTCTGCGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATGCAATTTCCTTTGCGATGCCGATTCGTTCCTCCCCTTGTTTTAATTCCTGTATGGTGCAATTGAAATCAAGAAGTCTATTACAGACTATTACACGTCTTATGTTTTAATTCCTGTATGGTGCAATTGAAATTCGAACCAAAAACTGAAGTTAATAACGTTAAACTTGAGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCTCCAAGAGCCCATCTACGATATAGGAGCTGCTCTC # Right flank : TCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTAATTCCTGTATGGTGCAATTGAAATAAAAAAAATTTGAGATTTGCAAATTAAATATGAAATAGTTTTAATTCCTGTATGGTGCAATTGAAATACAATGAACGAAAAGAAAATTAAAACCATTTTTACAAGTTTTAATTCCTGTATGGTGCAATTGAAATTGTTTCAGATTCAAGCAAGTAGCTTGCTCTCTCCAGTTTTAATTCCTGTATGGTGCAATTGAAATAGCTACCCAAAAGCCTGCTATCTGTTTTTTCTGCCAGTTTTAATTCCTGTATGGTGCAATTGAAATTATAACGAGGGTTTTCCCAGTGCGCCCAGTTAAATGGTTTTAATTCCTGTATGGTGCAATTGAAATTATACTCGACACCTTGAGATACAGCAATCGGCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 13 8011-8369 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8011 30 100.0 37 .............................. ACAATGAACGAAAAGAAAATTAAAACCATTTTTACAA 8078 30 100.0 35 .............................. TGTTTCAGATTCAAGCAAGTAGCTTGCTCTCTCCA 8143 30 100.0 36 .............................. AGCTACCCAAAAGCCTGCTATCTGTTTTTTCTGCCA 8209 30 100.0 36 .............................. TATAACGAGGGTTTTCCCAGTGCGCCCAGTTAAATG 8275 30 100.0 35 .............................. TATACTCGACACCTTGAGATACAGCAATCGGCGTC 8340 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCTCCAAGAGCCCATCTACGATATAGGAGCTGCTCTCGTTTTAATTCCTGTATGGTGCAATTGAAATCATTGATAAAAAGTCTTTAAAAAGTAATAATTTGGAGTTTTAATTCCTGTATGGTGCAATTGAAATAAAGATCCATTAGTAACGTTTGATGAGGAGCTCGGAGTTTTAATTCCTGTATGGTGCAATTGAAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTAATTCCTGTATGGTGCAATTGAAATAAAAAAAATTTGAGATTTGCAAATTAAATATGAAATA # Right flank : TAAGAAAGAGAACTGCAGGCGTGTAGCCTCATCGGGCGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAATTCCTGTATGGTGCAATTGAAATTAAGAGGGAGATAATCTAACACAGACATACTCTTCTGTTTTAATTCCTGTATGGTGCAATTGAAATTTGTTGCTGCTATGAGCCCAATTTCTTCTTGTAATCTGTTTTAATTCCTGTATGGTGCAATTGAAATTTTAATTGACGCTTTTTCATAATTAAGGGAATCATCGGTTTTAATTCCTGTATGGTGCAATTGAAATGCACCAATGTTAGGTTATTTACTGCTTCTTTATGCCTGTTTTAATTCCTGTATGGTGCAATTGAAATCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 14 8600-8832 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259002.1 Porphyromonas gingivalis F0569 Scaffold1116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8600 32 100.0 35 ................................ TTGTTGCTGCTATGAGCCCAATTTCTTCTTGTAAT 8667 32 100.0 35 ................................ TTTAATTGACGCTTTTTCATAATTAAGGGAATCAT 8734 32 96.9 35 .G.............................. GCACCAATGTTAGGTTATTTACTGCTTCTTTATGC 8801 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 99.2 35 CTGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATTGAAATTGTTTCAGATTCAAGCAAGTAGCTTGCTCTCTCCAGTTTTAATTCCTGTATGGTGCAATTGAAATAGCTACCCAAAAGCCTGCTATCTGTTTTTTCTGCCAGTTTTAATTCCTGTATGGTGCAATTGAAATTATAACGAGGGTTTTCCCAGTGCGCCCAGTTAAATGGTTTTAATTCCTGTATGGTGCAATTGAAATTATACTCGACACCTTGAGATACAGCAATCGGCGTCGTTTTAATTCCTGTATGGTGCAATTGAAATAAGAAAGAGAACTGCAGGCGTGTAGCCTCATCGGGCGTTTTAATTCCTGTATGGTGCAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAATTCCTGTATGGTGCAATTGAAATTAAGAGGGAGATAATCTAACACAGACATACTCTT # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //