Array 1 2604279-2605466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032936.1 Escherichia coli strain CHL5009T chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2604279 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 2604340 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 2604401 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 2604462 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 2604523 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 2604584 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 2604645 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 2604706 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 2604767 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 2604828 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 2604889 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 2604950 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 2605011 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 2605072 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 2605133 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2605194 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2605255 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2605316 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2605377 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2605438 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2631164-2631924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032936.1 Escherichia coli strain CHL5009T chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2631164 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 2631225 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 2631286 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 2631347 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 2631408 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 2631469 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 2631530 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 2631591 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 2631652 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 2631713 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 2631774 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 2631835 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 2631896 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //