Array 1 505679-503324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQZ010000001.1 Bifidobacterium choladohabitans strain W8113 NODE_1_length_860402_cov_359.953021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 505678 32 100.0 35 ................................ CAACAGTATCGGGCAAAAGCCACGCGGGCAAAACC 505611 32 100.0 35 ................................ TGACTATCGCAACCGCGATTGTCGGTGTATTTAGC 505544 32 100.0 33 ................................ CAGTTCGAGCTTGACCGGATAACGGGCGGTCTC 505479 32 100.0 34 ................................ TCCAGGAAATAAAACAAAACCCCTACATCCGTTT 505413 32 100.0 34 ................................ TATGTATGACCAATGCCGTCACCTACAAGCAGAA 505347 32 100.0 35 ................................ ACCTGGAGGGGGCTGCGCACGGTGGAGGTCATCGA 505280 32 100.0 35 ................................ CCCCAGCAAGTGGGTGTCTCAGGCGATACCGTCGA 505213 32 100.0 34 ................................ AGTGACCGTCCGCCCGCATTGTCGCGTCGTGTTA 505147 32 100.0 35 ................................ TTTTGACAAGAACCCCACCCCTTATGCGGCACCGG 505080 32 100.0 34 ................................ CAGGCTCAATGCCCGTCTGTCCGGCGAGGCGGGA 505014 32 100.0 34 ................................ GATGCTGTCGTCGCGCCGTTTGACGCATACGTGT 504948 32 100.0 35 ................................ CGGGTCGCCGATACGCGCGCGCAGGTAGTCCAGGA 504881 32 100.0 35 ................................ AAAGTCAGATCAGGCGACCCCATCCGCACATAGCC 504814 32 100.0 35 ................................ AGGAAAGCAATCACCCACTATGAGGAATCGGACGA 504747 32 100.0 35 ................................ CACGCAGTCTGCACCGTCGGAGGCCAGCTGGTCAA 504680 32 100.0 34 ................................ TGAGAAAACACGGGAATCTACTGGCGACCAACAT 504614 32 100.0 34 ................................ TGCACGCTCCAGGCCTGGTAGTTGGTGCGCTGGT 504548 32 100.0 35 ................................ CCAATAGCGGATAGCCTGTGCTGTGGTCCCTAGAG 504481 32 100.0 34 ................................ GCTGGCTTGCTTGGATGTCTTGGTGGTGTCGCTG 504415 32 96.9 34 ....T........................... CTCCAGGCTCGAACTTTCGCAGTGACCGCCCCTG 504349 32 100.0 34 ................................ AAGAACGTGCTCATGTTCAGCGCCAATCCCACCA 504283 32 100.0 34 ................................ GGATCGGACACCCAGGTGTTGGGCGGCATGCGGT 504217 32 100.0 34 ................................ CGACCGGCTGTATTGTGAGACGATGTAATTGGGG 504151 32 100.0 34 ................................ TCATTCCAATCCAGGGTGAGATCGCCTGTCAGCA 504085 32 100.0 33 ................................ CAGACCGCTGCGAAGGGCGACAGGATCCAGCTG 504020 32 100.0 35 ................................ TGGATGTATCCATACACGGTGTTTTGAACATCATT 503953 32 93.8 34 .............T.............C.... ATGTACAGCGATACGGACTCCATACACTTGTCAA 503887 32 96.9 35 ......................T......... GAGATCGGGGACGACTGGTCGCAGGCGTCCTACAT 503820 32 100.0 34 ................................ TTGCTGATGGGAGTCCCGTCCTCGCGTGCGACTA 503754 32 100.0 34 ................................ AACGGATAAGTCAGCAAGTACGTAAAATGCCACA 503688 32 96.9 36 .............T.................. CTTATCGGAAAAGTCGTCGTACTCCTCATCAGGCAG 503620 32 96.9 34 ................A............... GTATAGTGTGATTCGTCAAAGATAACACCCCATC 503554 32 96.9 35 ...................G............ ACCGAAACCGCATGGATAGACGACCCAATCCCCGT 503487 32 100.0 33 ................................ GTCTCGAAAATGGTGCGACTGCCACGCGCCTGG 503422 32 93.8 34 .............T.................G TCGGGACCTAGGCGTATATTGGAAAGCCGGAGCT 503356 32 81.2 0 ....T....G.T.T.C............G... | G [503327] ========== ====== ====== ====== ================================ ==================================== ================== 36 32 98.7 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : TGAGGCGCCATATCCCCGTTGACCAAGTGATGATGCTATAGAATCACGGGACTTTGGTTATGTGCTTTTGAGTGTATTGTATTGTTTGAGTCACTGAAATTAGATGCTGGTTAAGTGATTGGCGTAATTCTGTAAACAGTGCATATGCTGACTGATTTTGTGGACCATCGTTGGCGCGAAACTCCAGCAATCACGTATTCGTCTGATCCTTCGCGCTGCAGATCGTGCTTTAGAACAATAGTCGATCTAAATTTCGCATGTTTTTGTGGTCAATGTTCTTTTTCAAAGTTACAAGCGGAAAGCTATAGGTGCGAAGAAAGCTAGAATTTTAGTGAAACGGATGAATGGTTGTTTGATAACTGAATAGTGATGTTATCGACTTGAGCAATCATCTCAATTGCTCGACTAGAAACATGAGATGGGTACCTGGGTTGGACTGCTGTGAGTCTTCAGCCATTAAAAGCTGATCATATATTGGTCATCAGATGTATCATTGTGCT # Right flank : ACCACTACGAATGGTTCTCTACCTGTGGTAAATGCGTTGCCCCTTTCGTGGAAGCCTAAATTGGAAAACCGATTGCTCCCTTTTAAATTACCCAGACAGCATTTTTTCTATCGGGAACATGCATTAAATCAGTACTTTCGCCAGAACACTGCCAAGGATTATACTCCTACTAAACAGGATTATGAGTTGCTGCTTCGGCATAGTCTCAGTCGTTTTTATACCATTTACTTGTTCCTAGCCGCGAGAGTGCCGTGCTCCCCTACATCCGCGAGGATGATACAAAGAAGTGGACCGCAACAGTTTAGGAGTATACAAATACTGCCGGTGTTCCCCGCATCTGCGGTGATGATTCTACGGGCCATCGGATGATGCCCTGCAGGTTCACAAATATGAGAGGAGATGAATGGCTATGGATGAGGATTTTATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTCATGACCATATTCCTGATGACAGGATTAACAGTTATG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //