Array 1 249343-247849 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETC01000013.1 Salmonella enterica subsp. enterica serovar Montevideo str. 366867 isolate FDA_2010_211_Perch SEEM867_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249342 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 249281 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 249220 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 249159 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249098 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 249037 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 248976 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 248915 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 248854 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 248793 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 248732 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 248671 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 248610 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 248549 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 248488 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 248427 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 248366 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 248305 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 248244 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 248183 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 248122 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 248061 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 248000 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 247939 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 247878 29 93.1 0 A...........T................ | A [247851] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266544-265478 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETC01000013.1 Salmonella enterica subsp. enterica serovar Montevideo str. 366867 isolate FDA_2010_211_Perch SEEM867_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 266543 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 266482 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 266421 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 266360 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 266299 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 266238 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 266177 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 266116 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 266055 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 265993 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 265932 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 265871 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 265810 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 265749 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 265688 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 265627 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 265566 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 265505 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //