Array 1 22648-24002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALA010000020.1 Neisseria meningitidis strain 107080 NODE_20_length_40763_cov_39.669758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22648 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22714 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22780 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22846 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22912 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22978 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23044 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23110 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23176 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23242 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23308 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23374 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23440 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23506 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23572 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23637 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23703 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23769 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23835 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23901 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23967 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //