Array 1 12743-11982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFC01000006.1 Streptomyces griseolus strain NRRL B-2925 contig6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12742 29 100.0 32 ............................. GGAACCGGGACGGGCGGGCAGCCGAAGGGCAT 12681 29 100.0 32 ............................. CGAGGTGCTGAAGGCCACGGGTGACCTTCGAC 12620 29 100.0 32 ............................. GTTCGCGGCGAAGTGCGCCTCGTGCACTGCGC 12559 29 100.0 32 ............................. CACCTTGGAGACATCGCCGCCACCCAGCCCGA 12498 29 93.1 32 ...................CC........ TCCGGCCCCACCCTCGTCCACGTCCGGAACCT 12437 29 100.0 32 ............................. AAGATCAAGCGCACCGGGCCGCTCGGCGCCGA 12376 29 100.0 32 ............................. GCCCGGGACAGCAGACCGAGCGCGGCCAGGCG 12315 29 100.0 32 ............................. AACAGGGCGAACGGGGCGAACAGCAGCCCCAG 12254 29 100.0 31 ............................. CCGCTGCGCTGGGGCTTCTACGAGGAGATCG 12194 29 100.0 32 ............................. ACCGCGGTGACCGGGCTGCTCGCCAACCTCCC 12133 29 100.0 32 ............................. GATCCCGCCGTGGAAGGGCACTTGCGGATGTG 12072 29 93.1 33 ..............T......G....... GAAGCCGAAGCGCTCCGGGCGCGGGGCTTCCTG 12010 29 93.1 0 ...........T.............C... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTCCCCACCGCCCGGGTGGACCACCAGCAGGTTCGGCCCGGAGCCGTCGTCCAGGGCGGTGACGGTCCGGCCGTCAGCGGATGATGCGTGAAGCTGAGTCATACGTACAAGCCTGTCGGAAGCTGCCGACAATGTGCCCGCAGGCGGCCGAGCGTCCCGCGCGACCCCCTTGTCCGCTTCGCTCCGCGCATGGACGCCCGTCCGATGGTCTCCCTCCGCGAGGTCTCGTACCTGTTCGGCGTGCTCCAGCACACCGCGTCCCGCGTCATGGGATATGCCTCCGACCACAACGGCCCGAAATGGGTGTGCTGGAAAGCGGAGCAGGATTGGTGCCGAGACGGCTGAGGCCTGGCAACTGGTGATCGGCGGCGAGAGCTTGGCTAGGCTGGCTCTCCGAAGGTAGGGGGTTCGTCAAGATGGGTCTTTTGTGCGTATTGCCGGAGTTGGTGAAAGTGCTTCAGAATGACCAGCCGCGCCGGTAGACCCGCTGGTCACGGAGT # Right flank : GACCGTTGAAAGTCGGCGTAGTTGAGCGTGTCCTGTCCCCCCGCTTGAGCGGGGATGAACGATGCCGCAGCGCACAGCGACCGGATCGCCGTCCTCGCGACCGAGCCGGAACCGGCCCAGGAGGTGATCGAACGGCTCCTGGGCACCGGGCACGGGTGTCACCGGCCAGGCCACCGGCACCGCGTCGGCCGGGGCGTCAGCGACGAGGTCTGTGTGGCGCGCTGCCCGATATCGCGATCCCCCGGGGCCTCGCGGCCGGCCATGGTCTGGTGGTGGGCCGTCCCAAGGGGGCATCCGTCGCTGGGAGTAGGTCCCGCGCCTCAGGCGCACTCCGCGCCCGCTGGCTAGGGTCGGTCCGCATGGAGACCTCGGGGACCGGTCGTCGCCGGACGGCGGAGCGTAAGCGTGACGTGCTGGAACGGCTCGTCAGCGAGCGGGACGTATGGGTGGCGACGGCTCATCCCGAGCATGGGCCGCACCAGGTGCCGTTGTGGTTCTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16978-16398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFC01000006.1 Streptomyces griseolus strain NRRL B-2925 contig6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16977 29 96.6 32 ....C........................ CAGAGGTGACACCAACGGGCGTCGGCCGACGG 16916 29 93.1 32 ..........T..............C... GCCACCGGCGGCTACCACTTGGTGCTGCGCGC 16855 29 100.0 32 ............................. CTGACGACGATGGGCAAGGCCCTGGGTAACGG 16794 29 93.1 32 ................T........A... GTGTCGAGGTCCATCACGATCGCCGGAAGCCT C [16785] 16732 29 93.1 32 .....T..............A........ GACTGCATCGGTAAAACTGGCCGCCTGACCGG 16671 28 86.2 32 .....T.......-...C.......A... CAGAATGTGAAGACGCTGCCGTAGCCGGTGGC 16611 29 89.7 32 ............T.T......G....... GCTATGTAGGGGGCGCCTCGCCGGTATGTGGC 16550 29 93.1 32 .......T.....G............... AGCGGGATGACCAGGAAGCACAGGCCCGTGTG 16489 29 96.6 32 ..............T.............. GTGGCGGCGGCTCCGTCGAGCAGGAGCTCGCG 16428 29 86.2 0 T...........T.......A.....G.. | G,G [16402,16415] ========== ====== ====== ====== ============================= ================================ ================== 10 29 92.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCATGACGTACAAGTGCCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAACAGCTCCGACGTACCTCACGATTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCAGGTCCATTCGATCAGCCTAGACCGCGTCATTTGGCTAGCCGGATAAGGGCGGCGATGACTGCTCGCCGCCTGAGTCGCTGCGAGTGCTGATCCGAACGGAAGGCTCTAATTCTGGCTATGGGGGTTCCTGCATGGCCGGTGGTCAACGGGGCAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCCGCGTTGAGTCTTTTGCGTGTAATGCCGGAGTCGGCGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACTTGCTGGTCGCGGAGT # Right flank : GTGTCCAGTTGAGGCAGGTGTAGTCATTGGTGCGGGGGTGTCGCCCGCGGTGTCGGCGCGCCCGCCTGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGATCACCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGACGCTCAGTTCGAACTTCGTTGGGGTGGGGTCCACGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGGTGACCACGGCCGGGAGTGCTGCGGTCGCCTGCTGGGTGGGTCGCTGACGGGCGACTCCGACCTCGGGTTCCCGGCCGGCCGGAATGCGCGACCCGAGGCCGAACCCTGGCCCATGGGTGAAGCGCATGCGCGTGAGAACTTCCCGCGTGGTGCGCGCGGCGGGCGATGTCAGCGGGCATGTCCGGCACCCACGCCCGCTTACGCCGGACGGCCCGGCTCCGTGGTTGTGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTGG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 19791-19578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFC01000006.1 Streptomyces griseolus strain NRRL B-2925 contig6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19790 30 96.7 31 .............................A ACCAGCAGACCGAGAACGATGGGGGCGAGCG 19729 30 100.0 31 .............................. TCCGCGCCGACCACGGCGAAGCCACCACCGA 19668 30 100.0 31 .............................. GCAGCACCGGAGAAAGCACCGTCGGTTTTGA 19607 30 83.3 0 .....................G...CGGT. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GACGTGGAGGATGAACGTGAACGACTGCTCCTGTGCACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGAGCTTGACCAGTTGCAAGCCCTTGCGCTTTCGCCCCGAGCGTCTGCCGACTTGATCCGCTCCGTCATCGAGGAGGGGTACTGTGTCTCCCGACTTCCGTCCCGGGCTCGGCGCCGTCGTCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCCCCGGCGTGCTCCCGGTCCGCGACAGCAAACGCCCGCAGGGACCGGTGCTCGTGTTCGGGGCGTCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGTAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGTTGGTAAACCCGCTGGTCACGCGGT # Right flank : CCAGCACCGAGAGGGATAAGTGAGGTCCGAGACAGCAAACGCCCGCAGGGACCGGTGCTCGTGTTCAGGGCGTCGGCCTGGTCTGCCTTCGTCAACGAGTTGAAGGCGAACCTTCCCGCGTAAGAAAACGAGGTGCCGGGCGTGTGAGCGTCCAACATCCTGGGGCGTATGAACGTCCAGGTGGCAACGCCCCGTTACGAGATCCGCGCCCAGTACACCGCTTCGACGGTCACCGTGTATCAGGCGTACTCGCCCGCCATCGGGCTGCCCGCCGTACGGGACGGTCGATTCCCGGCAGCCTGGAAGCGGGATCGGATGACCTGGGTCAAACCCAGCTTCCTGTGGATGATGTACCGCTGCGGGTGGGGTACGAAGGAGGGGCAGGAGGTCGTGCTTGCCGTCGAGGTTGAGCGGGCGGGACTCGCCTGGGCGCTGGAGCACGCGGAGCTGTCCCATTACGTGCGTGACGTCCACGAGGACGAGGCCACCTGGAAGCGGAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //