Array 1 16490-17119 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRW01000023.1 Streptococcus iniae strain QMA0141 NODE_2_length_108065_cov_133.227_ID_2845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16490 36 100.0 30 .................................... GTGGAGCTATCAAGGCTGTACTAGATGGAT 16556 36 100.0 30 .................................... AGTTTCAGCATGTTCATCAGTAACACCCTC 16622 36 100.0 30 .................................... TATTAGAAGTTATATCTCAACTAAGAAACT 16688 36 100.0 30 .................................... ATGCCGTACAAGACAGAATATATCAGTCTG 16754 36 100.0 30 .................................... ACAACTTTTATTTCGTCAATATAGATTCCA 16820 36 100.0 30 .................................... CTTTTGCAACTGCTTCGCTAGCGTTAACAG 16886 36 100.0 30 .................................... TTTTACTTTTTGGAGATTAACGCCTATGAA 16952 36 100.0 30 .................................... TTGCAAATCATTATAAGATTTCAACAAGCT 17018 36 100.0 30 .................................... TTACAAAAAGGGTTTGAAGATGCTATTTCA 17084 36 91.7 0 ..............C.G..................A | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAAGTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : ACTTTTACAGGTTATTGCTGATGAATAGAAGTTTTAGAGCAGTGTTTTTTGTGTGCTTCTTTAAGGCAATATTTCCCATTTGAATAACTTACATATTCAGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTCAAGCGCGGGTTAATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 20243-22514 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRW01000017.1 Streptococcus iniae strain QMA0141 NODE_4_length_98647_cov_150.179_ID_1717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20243 32 100.0 34 ................................ TAAATTAAAAGAAGCTTTAACTAAATTAATTAAT 20309 32 100.0 33 ................................ TTATCATGACGGATTTGAATCAGGTAACTTTGT 20374 32 100.0 33 ................................ ACGACTATTTACATTTTTATTTAAGCAAGCTTT 20439 32 100.0 33 ................................ TAATAATATTTTACCTATATAATTCGTATTATA 20504 32 100.0 34 ................................ TTCTAAGTCATATTTAGTATACTCATAATCAGTT 20570 32 100.0 34 ................................ GTGTTGTTTATGTGTCCTTTTTCAACCAAAAATA 20636 32 100.0 36 ................................ TAGCAAATCGCTTGAAAAAGCTATCATTTTACGTAA 20704 32 100.0 33 ................................ AGACAACATTAAAATAAGTGTTTTCTACGGACC 20769 32 100.0 34 ................................ ATATTATAGACTTCTCCTTCCTTTTCGAGATTGA 20835 32 100.0 33 ................................ TCAAATAGCTCCTATTATTGGTCAGATATCAAA 20900 32 100.0 35 ................................ TATATGTGATGATAGTACCCTCTTCGACAGATAGC 20967 32 100.0 35 ................................ CAGAGTGGTTAGACGATAAATATGTTGGGCAAGTC 21034 32 100.0 33 ................................ AATCACATGTTTTGGTGAAATCTTTGTTTTTGA 21099 32 100.0 36 ................................ TCATAATTAGTTACCAACAAGCTTTCTAATTTCATC 21167 32 100.0 33 ................................ TTACCAACGAGATTTTTTACATTTTCCATTAAT 21232 32 100.0 34 ................................ GCTCCTCAACATACTGATGGCCTGCGAAGTTTTG 21298 32 100.0 35 ................................ GTCATTTATGCAGGCTTACAAAATCGATTTGATAG 21365 32 100.0 33 ................................ ATACAGGTTGGTCAACTACGATTAGCGGTTATA 21430 32 100.0 33 ................................ TCCTTGATAAATAATCCACCACCAGGGACCAAA 21495 32 100.0 33 ................................ AAAATCAGGGGTACGAACTGGGAAGGGGCTACG 21560 32 100.0 33 ................................ TTGTGTCCAACCCTCTGCATAATTTGTTTAAGT 21625 32 100.0 33 ................................ ATTTAATTTTGCAAAAAATGAGCAAGGGATTTT 21690 32 100.0 35 ................................ ATGATTTTAAAGCTATTGTGTTGAGTGATTAACTG 21757 32 100.0 35 ................................ AAGGCACTATCCAAATTATGGGATTTAAAGAAGTT 21824 32 100.0 35 ................................ AGCAACTCCTAGATTCTGTATAATTATAGCAACCA 21891 32 100.0 34 ................................ ATAATCCCACATGTTTTCGTTAAAAAATGGAAAG 21957 32 100.0 34 ................................ TGAAACATCTACCATAAAATAGACTAAAATAACC 22023 32 100.0 33 ................................ AGGTTCATTGTTACATTACGGGAAAGTGTTATT 22088 32 100.0 35 ................................ TCAAAACTCTAGACACTAACTAGGTATGTATGTGT 22155 32 100.0 35 ................................ TTGTACCCATTTTAACAAAATAAAGGTGCAAAAAC 22222 32 100.0 35 ................................ TTGTACCCATTTTAACAAAATAAAGGTGCAAAAAC 22289 32 100.0 34 ................................ GTTGATGTCTGATGTCAAATTTTTGATTTGCTCT 22355 32 100.0 35 ................................ TGTAGTTAGTTCAGAAATTTTAGTGCTTAACTGTT 22422 32 96.9 29 ...................T............ TCAAAACTCTAGACGTTATCTAGGTATGC 22483 32 81.2 0 ..........A.AT......A..A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.4 34 GTCGCTCTCTTCGCGAGAGCGTGGATTGAAAT # Left flank : GGCAAAAGCCATTCGAGGAGACTTAGATTCCTATCCTCCGTTTTTAATCTAGGAGTAGTTTATGATGGTTTTAGTGACTTATGATGTTAATACGGGCAGTGCTGCTGGTCGAAAGAGATTAAGGCATGTAGCAAAACTGTGTGTTGATTATGGTCAGAGAGTACAGAACTCTGTTTTTGAATGCTCAGTGACCCCTGCAGAATTTATTGAGATAAAGAATGAGTTGCTTACTATCATTGACAAAGAATGTGATAGTATTCGCTTTTATCTACTTGGAAAAAATTGGCAAAATAGAGTGGAAACACTTGGACGTGATGACAGTTATGATCCGGATGTGGGAATTCTACTTCTGTAATTACTGATGGCGAACCTAGGTTACTCATTAAAACCCAAGGCATTCGCCCGTGAAAATAAAGAAATAATGGTCAAATGGAGTTTTTATCCTTGAATAAGCTGTAATAAAAGTTCTGTTTTTACCATAAACGGTGCAACCGTGCGCC # Right flank : GTGTGAGTTTATCAAGACATTTGGTATTTCTAAGTTTAAGGTATTGCATTTATTGTGCTACTCCTTATTATACAGACCTGTTTACCCCTTCATCTCAGCTTTTCTTTCTTCTTCATGTTATAATGATAGTTAGAGAGTGTTAAGGAGTGGCGTATGAGAGTTGTGACTTATGGTGTGGTGTCAACGGCACAGGTAGCACCAAGATTTATTGAGGGTGTTCGTTTGGCAGGTAATGGTCAAGTGTTAGCGGTGTCTAGCCGTTCTTTGCCTGTTGCCCAGGCTTTTGCAAGGACACATGACATTCCAAGAGCTTATGGGAGTCTTAGGGAGATGCTTTGGGACCCAGATATTGATGTTATTTATGTTGCGACGGTTAATAAAGAGCATTATTCTGTGGCTAAGCAGGCCCTCCTTGCAGGGAAACATGTCCTTGTTGAGAAGCCTTTTACGATGACTTATGAGCAGGCCTTAGAACTCTTTTTGCTGGCGCGTGAGCAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //